Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1568 Fragaria x ananassa HOM05D005999 ORTHO05D003360 1.6e-140 503.4 413 100.0
FAN19G2768 Fragaria x ananassa HOM05D005999 ORTHO05D003360 1.1e-128 464.2 277 88.1
FvH4_1g10990 Fragaria vesca HOM05D005999 ORTHO05D003360 3.1e-128 462.6 416 95.2
RcHm_v2.0_Chr2g0098251 Rosa chinensis HOM05D005999 ORTHO05D003360 2.3e-110 403.3 422 83.9
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 5.2e-91 339.0 293 65.2
MD15G1236900 Malus domestica HOM05D005999 ORTHO05D003360 2.1e-87 327.0 420 75.2
Eucgr.I02298 Eucalyptus grandis HOM05D005999 ORTHO05D003360 5.8e-74 282.3 228 66.7
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 4.2e-72 276.2 298 54.4
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 5.1e-70 269.2 287 55.4
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 7.4e-69 265.4 234 62.4
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 6.2e-68 262.3 287 53.0
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 1.1e-67 261.5 230 58.7
Cfa007034 Carpinus fangiana HOM05D005999 ORTHO05D003360 1.8e-67 260.8 291 53.6
CiPaw.08G125500 Carya illinoinensis HOM05D005999 ORTHO05D003360 1.8e-67 260.8 291 55.7
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 4.0e-67 259.6 275 55.6
Sabra05G0086500 Salix brachista HOM05D005999 ORTHO05D003360 4.0e-67 259.6 287 53.7
Haze_03698 Corylus avellana HOM05D005999 ORTHO05D003360 5.3e-67 259.2 290 53.4
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 6.9e-67 258.8 293 52.9
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 9.0e-67 258.5 295 53.9
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 1.5e-66 257.7 296 52.7
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 2.0e-66 257.3 291 50.9
Potri.005G105800 Populus trichocarpa HOM05D005999 ORTHO05D003360 2.0e-66 257.3 300 52.3
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 2.6e-66 256.9 295 53.9
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 2.9e-65 253.4 289 57.4
QL06p052235 Quercus lobata HOM05D005999 ORTHO05D003360 4.9e-65 252.7 235 58.7
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 6.5e-65 252.3 292 51.4
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 1.1e-64 251.5 285 52.3
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 1.1e-64 251.5 285 52.3
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 1.4e-64 251.1 276 51.1
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 1.9e-64 250.8 221 60.2
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 4.2e-64 249.6 297 49.8
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 7.1e-64 248.8 232 55.6
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 9.3e-64 248.4 277 51.6
Ca_24948_v3 Cicer arietinum L. HOM05D005999 ORTHO05D003360 1.6e-63 247.7 237 54.9
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 1.6e-63 247.7 288 53.5
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 2.1e-63 247.3 284 49.6
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 2.1e-63 247.3 297 50.8
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 2.7e-63 246.9 234 54.7
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 4.6e-63 246.1 235 54.9
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 4.6e-63 246.1 229 55.5
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 4.6e-63 246.1 228 56.6
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 1.3e-62 244.6 301 50.8
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 3.9e-62 243.0 232 54.7
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 5.1e-62 242.7 270 49.3
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 5.1e-62 242.7 230 54.3
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 6.7e-62 242.3 233 57.1
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 1.1e-61 241.5 226 54.4
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 2.5e-61 240.4 279 48.7
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 4.3e-61 239.6 240 57.1
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 5.7e-61 239.2 297 47.8
Hma1.2p1_0315F.1_g122640 Hydrangea macrophylla HOM05D005999 ORTHO05D003360 5.7e-61 239.2 236 54.7
CSS0001074 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 7.4e-61 238.8 230 56.1
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 2.1e-60 237.3 289 47.1
CSS0035556 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 2.1e-60 237.3 291 54.3
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 2.8e-60 236.9 315 46.7
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 3.7e-60 236.5 273 49.1
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 4.8e-60 236.1 246 54.5
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 4.8e-60 236.1 245 54.3
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 6.3e-60 235.7 308 48.7
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 1.1e-59 235.0 288 49.3
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 1.4e-59 234.6 284 51.4
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 4.1e-59 233.0 242 52.1
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 4.1e-59 233.0 242 52.1
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 2.9e-57 226.9 314 45.5
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 3.8e-57 226.5 240 52.5
HanXRQChr09g0257041 Helianthus annuus HOM05D005999 ORTHO05D003360 6.5e-57 225.7 236 51.7
Actinidia28736 Actinidia chinensis HOM05D005999 ORTHO05D003360 1.4e-56 224.6 218 55.0
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 1.4e-56 224.6 313 45.0
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 2.5e-56 223.8 235 55.3
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 4.2e-56 223.0 314 44.6
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 5.5e-56 222.6 270 47.0
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 9.3e-56 221.9 241 52.7
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 1.6e-55 221.1 233 55.4
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 2.7e-55 220.3 234 52.6
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 1.3e-54 218.0 284 45.8
CDE05G3499 Ceratophyllum demersum HOM05D005999 ORTHO05D003360 5.1e-54 216.1 236 52.5
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 1.5e-53 214.5 241 49.4
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 4.3e-53 213.0 243 50.6
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 9.7e-53 211.8 232 50.9
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 2.2e-52 210.7 299 44.8
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 1.1e-51 208.4 299 44.1
SGA_v2.0_scaffold58G20568 Striga asiatica HOM05D005999 ORTHO05D003360 1.1e-51 208.4 230 52.2
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 4.1e-51 206.5 239 48.1
vmacro18444 Vaccinium macrocarpon HOM05D005999 ORTHO05D003360 1.2e-50 204.9 279 48.0
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 2.2e-49 200.7 244 48.4
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 2.2e-49 200.7 307 41.4
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 3.2e-48 196.8 245 46.1
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 4.2e-48 196.4 240 47.9
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 1.8e-46 191.0 273 41.8
Hund16623 Selenicereus undatus HOM05D005999 ORTHO05D003360 5.1e-46 189.5 246 46.3
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 6.7e-46 189.1 243 46.1
Rhsim08G0029800 Rhododendron simsii HOM05D005999 ORTHO05D003360 1.5e-45 188.0 255 46.3
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 2.8e-44 183.7 232 47.0
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 4.8e-44 183.0 285 42.8
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 6.3e-44 182.6 240 47.9
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 7.7e-42 175.6 161 59.6
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 2.1e-39 167.5 282 41.5
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 8.8e-38 162.2 234 45.3
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 5.3e-35 152.9 229 42.8
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 1.6e-34 151.4 233 41.6
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 1.7e-33 147.9 267 38.2
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 3.8e-33 146.7 233 38.6
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 1.5e-32 144.8 163 46.6
Cpa.g.sc6.318 Carica papaya HOM05D005999 ORTHO05D003360 1.6e-31 141.4 182 48.4
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 1.2e-29 135.2 88 73.9
PSO017G5004 Papaver somniferum HOM05D005999 ORTHO05D003360 1.3e-25 121.7 236 37.3
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 1.7e-25 121.3 93 64.5
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 8.5e-25 119.0 93 63.4
Peaxi162Scf00439g00012 Petunia axillaris HOM05D005999 ORTHO05D003360 1.6e-23 114.8 160 47.5
SalBow3G2044 Salvia bowleyana HOM05D005999 ORTHO05D003360 7.7e-18 95.9 111 44.1
SalBow6G2335 Salvia bowleyana HOM05D002275 ORTHO05D003360 8.0e-15 85.9 111 40.5
SalBow6G0049 Salvia bowleyana HOM05D005999 ORTHO05D003360 2.3e-14 84.3 111 40.5
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 6.8e-14 82.8 154 35.1
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 2.8e-12 77.4 65 60.0
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 1.4e-11 75.1 72 51.4
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 5.4e-11 73.2 48 66.7
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 7.0e-11 72.8 44 75.0
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 7.0e-11 72.8 54 59.3
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 7.0e-11 72.8 54 59.3
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 1.1e-08 65.5 40 72.5
Lsat_1_v5_gn_3_14980 Lactuca sativa HOM05D005999 ORTHO05D003360 5.6e-08 63.2 109 38.5
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 2.3e-06 57.8 48 58.3
Glyma.17G206001 Glycine max HOM05D005999 ORTHO05D003360 6.8e-06 56.2 76 47.4


User provided reference genes

Program Settings