Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.6e-69 263.5 127 100.0
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 3.9e-45 184.9 128 73.4
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 3.9e-45 184.9 128 73.4
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 8.7e-45 183.7 128 72.7
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-44 182.2 128 71.9
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 3.3e-44 181.8 128 70.3
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.3e-44 181.4 128 71.9
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 5.6e-44 181.0 128 72.7
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 7.3e-44 180.6 128 69.5
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 7.3e-44 180.6 128 70.3
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.3e-43 179.9 128 69.5
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.6e-43 179.5 128 68.8
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.6e-43 179.5 128 69.5
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-43 179.1 136 67.6
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 2.8e-43 178.7 128 68.8
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 4.8e-43 177.9 128 69.5
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 4.8e-43 177.9 128 69.5
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 4.8e-43 177.9 122 72.1
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 6.2e-43 177.6 128 68.8
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 6.2e-43 177.6 128 68.8
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 8.1e-43 177.2 128 68.8
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.1e-42 176.8 128 68.8
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.1e-42 176.8 128 68.8
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.1e-42 176.8 128 68.8
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.4e-42 176.4 122 72.1
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.4e-42 176.4 128 68.0
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.4e-42 176.4 123 70.7
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 3.1e-42 175.3 132 65.9
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 3.1e-42 175.3 128 68.8
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 5.3e-42 174.5 122 70.5
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 5.3e-42 174.5 128 68.0
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.3e-42 174.5 128 68.0
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 5.3e-42 174.5 122 70.5
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 5.3e-42 174.5 122 70.5
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 5.3e-42 174.5 122 70.5
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.9e-42 174.1 125 69.6
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 6.9e-42 174.1 128 65.6
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 9.0e-42 173.7 122 71.3
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.2e-41 173.3 122 69.7
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.6e-41 172.2 128 64.8
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 5.8e-41 171.0 128 68.0
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.8e-41 171.0 122 68.9
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 5.8e-41 171.0 128 65.6
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.6e-41 170.6 122 69.7
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.6e-41 170.6 122 69.7
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 9.9e-41 170.2 128 65.6
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 9.9e-41 170.2 136 64.7
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.7e-40 169.5 128 64.1
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 2.2e-40 169.1 122 68.9
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.8e-40 168.3 124 66.9
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 3.8e-40 168.3 128 66.4
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 4.9e-40 167.9 124 66.1
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 4.9e-40 167.9 128 65.6
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.4e-40 167.5 122 68.0
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.4e-40 167.5 122 68.0
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 8.4e-40 167.2 128 64.1
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 8.4e-40 167.2 122 68.9
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.1e-39 166.8 128 64.8
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.1e-39 166.8 128 64.8
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.1e-39 166.8 128 66.4
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.4e-39 166.4 102 79.4
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 1.4e-39 166.4 128 64.8
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.4e-39 166.4 128 64.1
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.9e-39 166.0 128 64.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 2.4e-39 165.6 128 65.6
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 4.2e-39 164.9 122 65.6
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 5.4e-39 164.5 121 67.8
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 7.1e-39 164.1 121 66.9
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 7.1e-39 164.1 128 64.1
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 7.1e-39 164.1 128 64.1
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 7.1e-39 164.1 128 64.1
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 7.1e-39 164.1 128 64.1
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 7.1e-39 164.1 128 64.1
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 7.1e-39 164.1 124 66.1
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 9.3e-39 163.7 123 67.5
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.2e-38 163.3 145 56.6
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 1.2e-38 163.3 122 66.4
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 2.1e-38 162.5 128 62.5
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.1e-38 162.5 129 62.0
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 3.5e-38 161.8 152 55.3
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 3.5e-38 161.8 128 62.5
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.0e-37 160.2 121 66.1
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.0e-37 160.2 122 67.2
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.3e-37 159.8 144 56.9
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 2.3e-37 159.1 128 61.7
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 3.9e-37 158.3 122 66.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 3.3e-36 155.2 122 63.9
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 7.4e-36 154.1 113 69.9
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 9.6e-36 153.7 129 60.5
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.6e-35 152.9 119 63.9
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 4.8e-35 151.4 118 63.6
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.4e-34 149.8 116 67.2
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 3.8e-32 141.7 114 62.3
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 5.5e-31 137.9 128 56.2
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.1e-28 130.2 129 51.9
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.3e-27 126.7 70 87.1
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.5e-24 114.4 72 75.0
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.5e-24 114.4 72 75.0
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.2e-22 110.2 131 45.8
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.2e-22 110.2 72 72.2
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.2e-22 110.2 72 72.2
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.6e-22 109.8 81 66.7
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.7e-22 109.0 85 64.7
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 3.5e-22 108.6 66 78.8
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.3e-21 106.7 72 70.8
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.3e-21 106.7 72 69.4
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.3e-21 106.7 72 69.4
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 5.1e-21 104.8 84 61.9
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 5.1e-21 104.8 135 43.0
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.9e-20 102.8 72 68.1
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.9e-20 102.8 72 66.7
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 7.4e-20 100.9 65 72.3
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.3e-19 100.1 116 51.7
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.7e-19 98.6 73 65.8
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 4.8e-19 98.2 72 66.7
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.8e-18 96.3 67 71.6
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 2.9e-16 89.0 70 60.0
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.0e-13 79.0 37 89.2
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 4.3e-12 75.1 43 76.7
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 5.7e-12 74.7 37 89.2
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 9.7e-12 73.9 37 86.5
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.3e-11 73.6 37 78.4
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 9.4e-07 57.4 137 30.7


User provided reference genes

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