Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 5.4e-235 817.4 443 100.0
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.4e-227 792.0 444 95.9
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 4.1e-227 791.2 444 96.2
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.7e-226 788.5 444 97.5
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 2.4e-166 589.3 354 85.9
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 1.8e-150 536.6 448 63.4
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 2.9e-127 459.5 435 58.4
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 2.9e-127 459.5 435 58.4
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 1.0e-116 424.5 446 53.6
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 3.0e-116 422.9 441 54.4
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 1.1e-115 421.0 437 52.6
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 1.9e-115 420.2 442 52.7
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 2.0e-112 410.2 441 52.8
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 2.0e-112 410.2 447 50.8
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 3.4e-112 409.5 447 50.8
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 1.3e-111 407.5 432 51.6
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 1.4e-110 404.1 442 50.7
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 3.2e-110 402.9 408 52.7
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 5.4e-110 402.1 406 52.0
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 2.7e-109 399.8 442 50.2
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 2.7e-109 399.8 431 50.1
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 6.0e-109 398.7 443 50.8
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 6.0e-109 398.7 409 52.6
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 6.0e-109 398.7 352 65.6
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 1.3e-108 397.5 417 53.2
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 1.3e-108 397.5 407 51.6
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 1.7e-108 397.1 405 52.8
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 5.1e-108 395.6 411 51.3
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 5.1e-108 395.6 439 51.7
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 8.6e-108 394.8 445 51.0
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 1.1e-107 394.4 429 50.8
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 1.5e-107 394.0 441 50.8
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 1.9e-107 393.7 441 49.7
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 4.3e-107 392.5 425 50.8
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.2e-106 391.0 439 50.3
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 1.6e-106 390.6 403 52.6
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 5.2e-105 385.6 434 51.6
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 2.9e-103 379.8 439 48.3
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.1e-102 377.9 407 51.1
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 2.4e-102 376.7 415 50.1
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 5.4e-102 375.6 415 49.9
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 5.4e-102 375.6 425 49.6
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 7.8e-101 371.7 415 50.6
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 1.3e-100 370.9 415 49.6
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 1.7e-100 370.5 420 49.0
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 2.3e-100 370.2 415 49.6
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 5.1e-100 369.0 415 49.2
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 2.5e-99 366.7 413 49.2
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 3.3e-99 366.3 415 48.2
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 4.3e-99 365.9 378 51.3
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 5.6e-99 365.5 445 47.2
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 9.6e-99 364.8 415 48.2
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 9.6e-99 364.8 415 48.9
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 1.3e-98 364.4 422 48.1
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 2.8e-98 363.2 413 49.2
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 2.8e-98 363.2 414 47.3
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 3.6e-98 362.8 408 49.5
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 8.1e-98 361.7 415 47.7
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.4e-97 360.1 422 47.4
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 6.9e-97 358.6 414 47.3
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 9.0e-97 358.2 405 48.4
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 1.5e-96 357.5 451 46.1
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 1.1e-94 351.3 411 46.2
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 7.1e-94 348.6 429 46.4
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 3.6e-90 336.3 426 45.3
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 4.8e-90 335.9 443 44.5
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 6.2e-90 335.5 387 47.3
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 8.1e-90 335.1 415 47.0
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.4e-89 334.3 298 55.7
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 1.8e-89 334.0 420 45.7
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 4.5e-88 329.3 416 45.4
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 9.9e-88 328.2 418 46.2
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.3e-87 327.8 421 45.1
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 1.3e-87 327.8 413 48.2
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 4.9e-87 325.9 414 47.6
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.4e-86 324.3 421 45.1
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 3.2e-86 323.2 446 43.5
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 5.4e-86 322.4 417 43.4
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 7.1e-86 322.0 477 40.7
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 1.5e-83 314.3 439 44.4
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 1.9e-83 313.9 427 43.3
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 4.3e-83 312.8 377 44.8
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 7.4e-83 312.0 436 41.3
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 7.6e-80 302.0 405 43.7
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 1.9e-78 297.4 407 42.8
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 4.2e-78 296.2 437 40.0
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 4.6e-77 292.7 336 48.8
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 2.5e-75 287.0 358 48.6
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 1.0e-71 275.0 370 42.7
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 2.1e-69 267.3 342 47.7
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 1.9e-62 244.2 273 52.0
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 5.5e-62 242.7 387 39.3
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 1.6e-61 241.1 404 42.3
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 1.8e-60 237.7 399 36.1
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 6.5e-55 219.2 329 38.6
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 2.5e-54 217.2 369 34.4
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 2.7e-53 213.8 412 35.9
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 2.2e-47 194.1 238 43.7
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 2.9e-47 193.7 205 46.8
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 8.5e-47 192.2 214 44.9
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 1.6e-29 134.8 218 43.1
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 7.0e-25 119.4 203 35.5
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 3.8e-23 113.6 81 64.2
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 4.6e-16 90.1 109 42.2
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.3e-15 88.6 65 66.2
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.9e-15 87.0 56 67.9
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 8.6e-15 85.9 321 25.5
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 4.0e-12 77.0 70 58.6


User provided reference genes

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