Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.9e-81 305.8 156 100.0
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 5.5e-33 144.8 85 92.9
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 7.2e-33 144.4 86 90.7
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.6e-32 142.1 85 90.6
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 6.1e-32 141.4 89 86.5
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.7e-30 134.0 134 60.4
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 6.3e-29 131.3 84 83.3
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 2.8e-21 105.9 84 71.4
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 6.3e-21 104.8 84 70.2
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 8.2e-21 104.4 157 42.0
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 1.4e-20 103.6 84 66.7
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 7.0e-20 101.3 84 67.9
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.5e-19 100.1 84 67.9
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 2.0e-19 99.8 83 67.5
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 2.0e-19 99.8 83 65.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 5.9e-19 98.2 84 67.9
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 5.9e-19 98.2 153 41.8
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 5.9e-19 98.2 153 41.8
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.2e-18 96.3 84 61.9
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 2.9e-18 95.9 93 57.0
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 3.8e-18 95.5 80 66.2
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 6.5e-18 94.7 87 59.8
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 8.5e-18 94.4 83 61.4
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 8.5e-18 94.4 85 60.0
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.1e-17 94.0 82 63.4
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.1e-17 94.0 85 63.5
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.1e-17 94.0 86 61.6
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.4e-17 93.6 84 61.9
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.9e-17 93.2 84 63.1
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 1.9e-17 93.2 84 60.7
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.9e-17 93.2 85 60.0
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 2.5e-17 92.8 85 62.4
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 3.2e-17 92.4 84 61.9
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 3.2e-17 92.4 84 61.9
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 4.2e-17 92.0 84 61.9
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 4.2e-17 92.0 78 64.1
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 4.2e-17 92.0 83 60.2
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 5.5e-17 91.7 84 59.5
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 5.5e-17 91.7 84 60.7
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 5.5e-17 91.7 85 60.0
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 5.5e-17 91.7 85 61.2
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 7.2e-17 91.3 85 61.2
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 7.2e-17 91.3 85 61.2
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.2e-17 91.3 85 61.2
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 9.4e-17 90.9 83 62.7
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 9.4e-17 90.9 84 64.3
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 9.4e-17 90.9 85 62.4
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.2e-16 90.5 85 61.2
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.2e-16 90.5 79 65.8
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.2e-16 90.5 83 59.0
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.6e-16 90.1 83 63.9
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 2.1e-16 89.7 83 61.4
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 2.1e-16 89.7 83 61.4
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.1e-16 89.7 80 61.2
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.7e-16 89.4 84 60.7
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.6e-16 89.0 84 64.3
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 3.6e-16 89.0 84 60.7
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 4.7e-16 88.6 85 61.2
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.7e-16 88.6 85 58.8
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 6.1e-16 88.2 77 63.6
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 8.0e-16 87.8 84 61.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 1.0e-15 87.4 76 63.2
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.0e-15 87.4 84 57.1
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 1.0e-15 87.4 77 64.9
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.0e-15 87.4 84 58.3
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 1.4e-15 87.0 84 56.0
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.4e-15 87.0 80 58.8
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.8e-15 86.7 84 61.9
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.8e-15 86.7 90 56.7
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 2.3e-15 86.3 86 61.6
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 3.0e-15 85.9 81 58.0
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 3.9e-15 85.5 84 59.5
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 3.9e-15 85.5 84 59.5
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 3.9e-15 85.5 76 63.2
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 3.9e-15 85.5 85 55.3
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 5.2e-15 85.1 84 53.6
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 6.7e-15 84.7 84 58.3
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 6.7e-15 84.7 84 58.3
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 8.8e-15 84.3 80 57.5
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 8.8e-15 84.3 158 40.5
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 8.8e-15 84.3 90 54.4
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 2.0e-14 83.2 83 59.0
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 2.0e-14 83.2 83 59.0
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 2.0e-14 83.2 79 58.2
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 3.3e-14 82.4 86 57.0
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 4.4e-14 82.0 81 59.3
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 4.4e-14 82.0 163 39.9
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 4.4e-14 82.0 81 58.0
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.7e-14 81.6 84 53.6
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 7.4e-14 81.3 84 56.0
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 9.7e-14 80.9 77 58.4
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 9.7e-14 80.9 77 61.0
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.3e-13 80.5 84 56.0
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.3e-13 80.5 77 61.0
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.3e-13 80.5 84 53.6
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 1.7e-13 80.1 79 58.2
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 1.7e-13 80.1 81 56.8
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.7e-13 80.1 85 54.1
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.7e-13 80.1 100 50.0
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.7e-13 80.1 85 56.5
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.7e-13 80.1 85 56.5
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.7e-13 80.1 80 61.2
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 2.2e-13 79.7 86 57.0
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 2.2e-13 79.7 86 57.0
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 2.2e-13 79.7 77 59.7
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 3.7e-13 79.0 82 59.8
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 3.7e-13 79.0 107 46.7
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 4.8e-13 78.6 98 49.0
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.4e-12 77.0 77 55.8
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.8e-12 76.6 74 58.1
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.8e-12 76.6 100 49.0
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.8e-12 76.6 100 49.0
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 2.4e-12 76.3 90 50.0
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.1e-12 75.9 85 50.6
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 3.1e-12 75.9 77 58.4
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 5.3e-12 75.1 87 57.5
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 5.3e-12 75.1 81 56.8
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.2e-11 73.9 86 52.3
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 1.2e-11 73.9 85 51.8
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 2.6e-11 72.8 80 52.5
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 2.6e-11 72.8 77 54.5
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 3.5e-11 72.4 83 51.8
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 3.5e-11 72.4 86 51.2
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.0e-10 70.9 74 52.7
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.0e-10 70.9 84 50.0
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.3e-10 70.5 80 51.2
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.9e-10 69.3 73 47.9
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 6.5e-10 68.2 61 59.0
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.1e-09 67.4 77 51.9
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 1.9e-09 66.6 86 46.5
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.5e-09 66.2 70 54.3
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 5.5e-09 65.1 76 52.6
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 9.4e-09 64.3 84 50.0
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 2.7e-08 62.8 61 55.7
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 4.7e-08 62.0 84 48.8
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 8.0e-08 61.2 63 58.7
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.3e-07 59.7 74 47.3
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 8.8e-07 57.8 44 72.7
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 8.8e-07 57.8 44 72.7
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 2.0e-06 56.6 81 40.7
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 3.3e-06 55.8 50 62.0
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.4e-06 55.5 43 69.8
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.4e-06 55.5 43 69.8
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 7.5e-06 54.7 39 74.4


User provided reference genes

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