Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.1e-97 359.0 178 100.0
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 5.2e-96 354.4 178 97.8
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.0e-95 352.4 178 97.8
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.5e-95 350.5 180 97.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 1.1e-93 346.7 178 97.2
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 9.2e-93 343.6 178 96.6
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 2.4e-77 292.4 172 86.6
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.3e-75 286.6 180 80.6
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 3.0e-75 285.4 159 84.9
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.3e-74 282.0 161 82.6
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 5.2e-72 274.6 170 81.2
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 5.2e-72 274.6 159 83.0
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.5e-71 273.1 164 82.9
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.3e-70 270.0 164 80.5
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 4.9e-70 268.1 159 80.5
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 6.4e-70 267.7 169 78.1
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 1.1e-69 266.9 162 79.0
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.4e-69 266.5 159 81.1
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.9e-69 266.2 162 81.5
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.9e-69 266.2 166 78.3
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 3.2e-69 265.4 166 77.1
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 3.2e-69 265.4 163 79.1
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.1e-69 265.0 159 78.6
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 5.4e-69 264.6 159 78.6
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 9.2e-69 263.8 165 77.0
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 9.2e-69 263.8 166 75.9
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.2e-68 263.5 168 76.2
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.6e-68 263.1 162 78.4
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.6e-68 263.1 160 79.4
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.1e-68 262.7 168 75.0
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.1e-68 262.7 166 76.5
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 4.6e-68 261.5 164 78.0
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 6.0e-68 261.2 159 79.2
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 6.0e-68 261.2 159 77.4
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 6.0e-68 261.2 159 77.4
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 6.0e-68 261.2 159 77.4
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 6.0e-68 261.2 160 79.4
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 7.8e-68 260.8 159 79.9
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.0e-67 260.4 163 74.8
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.0e-67 260.4 165 77.6
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.3e-67 260.0 160 78.1
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.3e-67 259.2 159 78.0
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.3e-67 259.2 159 78.0
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 2.3e-67 259.2 159 78.0
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 2.3e-67 259.2 159 78.6
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.9e-67 258.5 160 78.1
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 8.6e-67 257.3 160 76.9
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.5e-66 256.5 162 77.2
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.9e-66 256.1 164 76.2
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.9e-66 256.1 179 73.2
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.9e-66 256.1 165 77.0
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.9e-66 256.1 162 76.5
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.3e-66 255.4 165 72.7
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 3.3e-66 255.4 160 77.5
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 7.3e-66 254.2 164 76.2
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 7.3e-66 254.2 159 74.8
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-65 252.7 188 68.6
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-65 252.7 188 68.6
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-65 252.7 188 68.6
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 2.1e-65 252.7 159 75.5
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 2.8e-65 252.3 168 75.6
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.8e-65 252.3 163 76.7
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 3.6e-65 251.9 189 68.8
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 4.7e-65 251.5 159 73.0
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 4.7e-65 251.5 159 75.5
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 6.2e-65 251.1 163 76.1
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 6.2e-65 251.1 162 74.7
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 8.1e-65 250.8 159 74.8
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 8.1e-65 250.8 172 71.5
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.1e-64 250.4 166 75.9
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.1e-64 250.4 165 72.1
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.4e-64 250.0 159 73.6
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.4e-64 250.0 164 72.6
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.8e-64 249.6 162 76.5
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.4e-64 249.2 164 75.6
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.5e-63 246.5 159 74.2
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.5e-63 246.5 159 74.2
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.5e-63 246.5 159 74.2
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 3.4e-63 245.4 159 74.2
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 3.4e-63 245.4 159 73.6
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 5.8e-63 244.6 159 74.8
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.6e-63 244.2 159 74.2
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 9.9e-63 243.8 159 73.6
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.3e-62 243.4 159 74.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.7e-62 243.0 159 73.6
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 2.2e-62 242.7 159 73.0
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 2.9e-62 242.3 152 77.6
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.8e-62 241.9 159 73.0
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 6.4e-62 241.1 159 72.3
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 6.4e-62 241.1 159 73.6
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 8.4e-62 240.7 159 73.0
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 8.4e-62 240.7 159 71.7
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 8.4e-62 240.7 170 71.2
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.1e-61 240.4 159 72.3
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.1e-61 240.4 159 72.3
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.9e-61 239.6 179 65.4
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 9.3e-61 237.3 159 71.7
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 9.3e-61 237.3 159 71.7
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 9.3e-61 237.3 159 71.7
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 2.7e-60 235.7 161 68.3
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 4.6e-60 235.0 159 70.4
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 7.8e-60 234.2 160 71.2
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 7.8e-60 234.2 205 60.5
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 2.3e-59 232.6 166 71.7
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.3e-58 228.8 167 64.7
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.3e-58 228.4 207 59.4
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.3e-58 227.6 135 79.3
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 2.1e-57 226.1 218 55.5
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 3.6e-57 225.3 174 63.8
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 3.6e-57 225.3 257 49.8
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.8e-56 223.0 197 60.9
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 2.4e-56 222.6 184 64.1
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 8.4e-54 214.2 183 63.4
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.6e-52 209.9 145 70.3
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 3.9e-51 205.3 164 62.2
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.5e-50 202.6 116 80.2
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 6.4e-46 188.0 109 78.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 8.7e-43 177.6 159 61.6
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.1e-42 177.2 135 63.7
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.3e-41 173.7 167 52.7
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 2.2e-38 162.9 112 67.0
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.6e-36 156.8 139 51.1
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 2.1e-36 156.4 102 71.6
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 3.9e-35 152.1 152 46.1
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 3.9e-35 152.1 112 65.2
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.1e-35 151.8 103 71.8
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 7.4e-34 147.9 100 74.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 8.2e-33 144.4 95 74.7
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 6.9e-32 141.4 88 75.0
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 6.5e-30 134.8 113 58.4
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.2e-28 130.6 108 62.0
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.2e-28 130.6 94 64.9
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 4.8e-25 118.6 112 44.6
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 8.2e-25 117.9 70 78.6
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 8.2e-25 117.9 70 78.6
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 9.1e-24 114.4 64 85.9
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 5.9e-23 111.7 79 73.4
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.7e-22 110.2 98 58.2
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.9e-22 109.4 110 42.7
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.4e-21 107.1 66 80.3
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 9.4e-21 104.4 110 57.3
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-20 104.0 93 55.9
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.1e-20 103.2 104 43.3
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 7.9e-20 101.3 81 65.4
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.0e-19 100.9 90 51.1
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 2.3e-19 99.8 60 75.0
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 2.3e-19 99.8 61 77.0
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 2.2e-17 93.2 106 41.5
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.4e-16 90.5 140 37.9
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 1.7e-14 83.6 66 63.6
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.9e-06 56.2 32 84.4


User provided reference genes

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