Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 7.1e-232 807.0 433 100.0
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 5.0e-217 757.7 430 94.9
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 2.8e-204 715.3 416 93.8
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.1e-203 713.4 416 93.8
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 6.5e-185 651.0 439 82.0
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 4.6e-106 389.0 397 59.4
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.7e-92 344.0 411 54.3
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 1.7e-92 344.0 505 46.9
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 6.1e-74 282.3 424 46.2
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.0e-73 281.6 394 47.2
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 1.4e-73 281.2 404 45.8
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 4.4e-72 276.2 297 54.9
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 1.6e-69 267.7 395 45.8
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.0e-68 265.0 418 44.0
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 1.7e-68 264.2 440 43.2
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 8.5e-68 261.9 412 42.7
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 5.5e-67 259.2 322 52.5
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.2e-66 258.1 434 44.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.6e-66 257.7 292 50.0
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 3.6e-66 256.5 297 51.2
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 2.3e-65 253.8 342 46.2
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 6.8e-65 252.3 447 43.0
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 6.8e-65 252.3 365 46.6
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.5e-64 251.1 294 49.7
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.5e-64 251.1 294 49.7
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 2.6e-64 250.4 447 42.7
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 2.6e-64 250.4 425 41.9
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 1.3e-63 248.1 449 42.3
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 2.2e-63 247.3 439 41.2
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 3.7e-63 246.5 367 45.0
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 4.9e-63 246.1 319 50.2
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.1e-62 243.0 329 48.9
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 4.1e-62 243.0 432 41.0
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 5.4e-62 242.7 318 49.1
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 9.1e-62 241.9 291 50.9
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 2.7e-61 240.4 343 47.5
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.5e-61 240.0 315 48.9
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.0e-60 238.4 406 41.1
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 2.9e-60 236.9 426 43.0
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 8.6e-60 235.3 313 48.6
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 4.2e-59 233.0 373 44.8
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.6e-58 231.1 416 41.8
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 2.1e-58 230.7 300 47.3
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 8.0e-58 228.8 414 41.8
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 6.8e-57 225.7 441 42.2
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 2.6e-56 223.8 439 40.1
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 4.4e-56 223.0 333 45.3
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 9.8e-56 221.9 303 44.9
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 1.7e-55 221.1 425 40.9
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.2e-55 220.7 325 46.5
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 6.3e-55 219.2 301 48.8
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 1.4e-54 218.0 289 46.4
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 2.4e-54 217.2 393 37.4
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 2.4e-54 217.2 367 40.6
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 3.2e-54 216.9 468 39.5
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 4.1e-54 216.5 337 43.9
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 4.1e-54 216.5 337 43.9
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 9.2e-54 215.3 283 48.1
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 1.2e-53 214.9 430 38.6
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 1.2e-53 214.9 307 48.9
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 7.8e-53 212.2 393 42.0
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.7e-52 211.1 304 45.4
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.3e-52 210.7 386 39.6
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.3e-52 210.7 433 38.6
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 6.6e-52 209.1 317 44.5
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 8.6e-52 208.8 390 38.5
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 1.1e-51 208.4 421 37.8
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 1.5e-51 208.0 319 44.2
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 5.6e-51 206.1 261 46.7
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 9.5e-51 205.3 312 44.2
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 9.5e-51 205.3 429 38.0
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 9.5e-51 205.3 390 38.5
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.2e-50 204.9 288 46.2
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.6e-50 204.5 315 44.4
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 4.7e-50 203.0 287 45.3
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 6.2e-50 202.6 303 41.3
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 8.0e-50 202.2 280 45.4
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.8e-49 201.1 320 43.4
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 2.3e-49 200.7 426 38.7
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.6e-48 197.2 318 43.1
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 2.6e-48 197.2 360 39.7
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.7e-47 194.5 432 37.7
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.7e-47 194.5 367 42.5
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.2e-47 194.1 435 35.6
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 2.2e-47 194.1 424 37.3
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 3.7e-47 193.4 386 42.7
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.7e-47 193.4 405 38.8
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 3.7e-47 193.4 397 38.0
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 8.3e-47 192.2 454 36.8
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 2.4e-46 190.7 291 43.0
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.2e-45 188.3 438 39.5
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 1.6e-45 188.0 321 44.9
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 4.6e-45 186.4 443 37.5
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 1.0e-44 185.3 294 45.6
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 2.3e-44 184.1 287 46.0
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 5.0e-44 183.0 422 37.4
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.1e-43 181.8 347 37.8
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 2.1e-42 177.6 310 42.3
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 1.1e-41 175.3 448 34.6
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.8e-41 174.5 281 44.8
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 1.8e-41 174.5 344 41.6
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 2.3e-41 174.1 449 34.5
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 5.2e-41 172.9 297 42.1
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 3.4e-40 170.2 311 40.2
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 8.3e-39 165.6 476 34.9
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 1.4e-38 164.9 435 33.8
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 1.4e-38 164.9 435 33.8
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 5.1e-36 156.4 420 34.8
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 1.1e-35 155.2 255 41.6
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 1.1e-35 155.2 278 39.6
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 1.1e-35 155.2 280 41.1
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 2.1e-34 151.0 255 39.6
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 2.0e-32 144.4 269 37.9
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 2.6e-32 144.1 274 40.9
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.4e-30 137.5 217 39.6
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 2.4e-30 137.5 231 41.6
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 9.2e-30 135.6 206 41.7
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 4.0e-25 120.2 286 31.8
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 6.8e-25 119.4 284 35.6
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 9.9e-24 115.5 254 34.6
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 4.9e-23 113.2 257 37.4
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.5e-19 101.7 275 34.2
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 3.1e-17 94.0 262 30.2
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 3.4e-16 90.5 363 30.3
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 1.2e-13 82.0 317 26.2
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 8.1e-10 69.3 116 37.9
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 1.1e-09 68.9 273 27.1
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 4.5e-08 63.5 175 32.6
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 9.9e-08 62.4 47 61.7


User provided reference genes

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