Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 7.5e-187 657.1 354 100.0
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.1e-185 651.7 354 99.4
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.1e-165 585.9 335 95.5
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 6.8e-164 580.9 318 99.4
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 8.4e-130 467.6 318 81.4
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 2.7e-104 382.9 347 65.1
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 2.0e-86 323.6 332 61.4
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 1.4e-84 317.4 326 59.8
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 2.4e-84 316.6 328 59.8
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 2.0e-83 313.5 316 59.5
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 1.9e-81 307.0 325 59.7
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 5.5e-81 305.4 323 58.5
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 9.4e-81 304.7 321 59.5
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.2e-80 304.3 319 58.9
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 1.6e-80 303.9 337 56.1
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 2.7e-80 303.1 319 58.6
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 3.0e-79 299.7 315 56.8
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 5.2e-79 298.9 324 57.4
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 6.7e-79 298.5 314 58.9
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 2.6e-78 296.6 324 56.8
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.6e-78 296.6 324 57.1
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 4.4e-78 295.8 319 57.4
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.3e-77 294.3 321 57.6
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 2.8e-77 293.1 314 58.0
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 3.7e-77 292.7 324 56.8
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.4e-76 290.8 314 58.3
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 2.4e-76 290.0 326 56.4
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 4.1e-76 289.3 331 56.5
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 7.0e-76 288.5 319 57.7
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 9.1e-76 288.1 317 56.8
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 1.6e-75 287.3 315 55.2
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 5.9e-75 285.4 316 56.0
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 1.0e-74 284.6 326 53.4
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.0e-74 284.6 329 56.5
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 5.0e-74 282.3 322 55.3
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 8.5e-74 281.6 315 54.9
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 8.5e-74 281.6 315 54.9
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.5e-73 280.8 322 55.6
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 3.2e-73 279.6 314 54.1
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 4.2e-73 279.3 314 52.9
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 5.5e-73 278.9 325 53.2
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 5.5e-73 278.9 313 56.2
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 1.2e-72 277.7 326 55.5
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 3.6e-72 276.2 325 54.8
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 4.7e-72 275.8 320 54.1
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 6.1e-72 275.4 323 52.6
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 6.1e-72 275.4 318 53.8
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 8.0e-72 275.0 315 55.2
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 8.0e-72 275.0 315 56.5
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 1.4e-71 274.2 320 54.4
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 2.3e-71 273.5 320 53.8
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 2.3e-71 273.5 314 53.2
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 3.0e-71 273.1 314 55.4
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 3.0e-71 273.1 324 53.7
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 5.2e-71 272.3 311 54.0
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 1.2e-70 271.2 314 53.5
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 1.2e-70 271.2 326 51.5
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 3.3e-70 269.6 319 53.0
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 5.7e-70 268.9 353 49.0
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 5.7e-70 268.9 319 53.3
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 1.3e-69 267.7 312 55.1
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 3.7e-69 266.2 325 53.5
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 4.8e-69 265.8 304 55.6
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 1.4e-68 264.2 315 54.3
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.4e-68 263.5 314 54.8
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 4.1e-68 262.7 200 69.5
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 1.6e-67 260.8 317 53.9
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 4.5e-67 259.2 323 51.7
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 1.0e-66 258.1 358 46.4
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 2.9e-66 256.5 341 50.7
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 6.5e-66 255.4 316 52.8
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 1.1e-65 254.6 319 52.4
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 7.2e-65 251.9 323 51.4
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 9.4e-65 251.5 314 49.7
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 9.4e-65 251.5 314 49.7
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 2.7e-64 250.0 315 50.8
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 2.7e-64 250.0 311 51.4
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 4.7e-64 249.2 285 56.5
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 6.1e-64 248.8 322 50.6
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 1.8e-63 247.3 317 52.7
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 1.8e-63 247.3 313 49.8
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 3.0e-63 246.5 325 51.1
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 1.5e-62 244.2 289 56.1
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.5e-62 244.2 321 48.6
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 9.8e-62 241.5 265 58.5
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.3e-61 241.1 325 48.9
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 1.3e-61 241.1 196 67.3
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 2.2e-61 240.4 264 56.4
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 2.8e-61 240.0 338 48.5
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 2.8e-61 240.0 337 48.1
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 1.1e-60 238.0 320 48.4
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 2.4e-60 236.9 321 49.5
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 5.4e-60 235.7 327 50.5
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 1.6e-59 234.2 196 65.8
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 1.6e-59 234.2 196 65.8
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 7.7e-59 231.9 328 48.8
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 7.7e-59 231.9 314 50.3
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 1.3e-58 231.1 316 48.1
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.7e-58 230.7 122 96.7
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 1.1e-57 228.0 311 48.9
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 1.5e-57 227.6 317 48.9
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 5.5e-57 225.7 318 47.2
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 1.6e-56 224.2 323 48.0
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 6.8e-55 218.8 315 47.6
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 6.8e-55 218.8 315 47.6
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 3.4e-54 216.5 265 52.8
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 2.8e-53 213.4 316 48.7
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 8.6e-50 201.8 328 45.4
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 1.2e-48 198.0 314 43.6
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 2.8e-48 196.8 212 54.7
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 8.0e-48 195.3 330 42.4
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 6.8e-47 192.2 273 46.2
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.7e-45 187.6 275 47.6
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 1.7e-45 187.6 243 48.1
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.1e-44 184.9 222 50.9
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 3.2e-44 183.3 230 49.1
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 3.2e-44 183.3 171 61.4
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 3.9e-42 176.4 247 50.6
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 3.6e-40 169.9 338 40.2
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 1.1e-39 168.3 262 45.4
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 3.4e-38 163.3 249 46.2
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.2e-37 160.6 197 52.3
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 8.3e-37 158.7 338 36.7
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 1.9e-36 157.5 265 44.5
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 7.0e-36 155.6 173 54.9
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 2.5e-33 147.1 312 36.9
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 4.3e-33 146.4 328 37.8
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 4.3e-33 146.4 98 78.6
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 9.5e-33 145.2 322 37.9
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 2.8e-32 143.7 236 46.6
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 1.4e-31 141.4 315 35.9
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 2.3e-31 140.6 106 66.0
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 3.1e-31 140.2 215 48.8
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 6.8e-31 139.0 288 39.2
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 8.9e-31 138.7 223 46.2
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 7.5e-30 135.6 209 42.6
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.2e-29 134.0 98 68.4
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 2.9e-29 133.7 229 45.4
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 4.6e-27 126.3 216 44.4
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 3.0e-26 123.6 319 37.6
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 6.6e-26 122.5 340 34.7
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 7.1e-20 102.4 95 55.8
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 1.3e-18 98.2 93 54.8
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 8.7e-18 95.5 149 47.0
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 4.3e-17 93.2 82 63.4
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 9.0e-15 85.5 57 75.4
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 5.8e-14 82.8 71 66.2
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 1.7e-13 81.3 104 48.1
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 5.6e-09 66.2 217 32.3
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 1.1e-07 62.0 53 64.2
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 4.0e-07 60.1 148 35.8
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 2.0e-06 57.8 158 34.2
arahy.Tifrunner.gnm1.ann1.1A1X10 Arachis hypogaea HOM05D002737 ORTHO05D005828 2.6e-06 57.4 44 59.1


User provided reference genes

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