Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.2e-222 775.8 542 100.0
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 5.3e-208 728.0 579 91.4
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.5e-207 726.5 578 90.8
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 6.7e-171 604.7 545 76.0
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 5.1e-110 402.5 470 61.7
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 5.1e-94 349.4 541 48.4
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 5.3e-91 339.3 500 47.0
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 2.0e-90 337.4 488 61.7
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.8e-83 314.3 501 44.9
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.4e-83 313.9 487 60.0
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.2e-80 303.1 472 44.5
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 7.1e-80 302.4 478 44.4
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 3.9e-78 296.6 473 44.2
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 5.3e-75 286.2 555 42.2
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.6e-74 283.9 491 43.0
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 2.9e-73 280.4 541 43.1
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.5e-73 278.9 514 43.4
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.2e-71 275.0 495 39.6
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 4.6e-71 273.1 469 41.4
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.3e-70 270.8 493 42.8
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.5e-69 268.1 457 42.0
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.2e-68 264.2 500 40.8
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 6.3e-68 262.7 487 43.9
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.8e-67 261.2 477 41.9
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 2.6e-66 257.3 477 40.7
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.0e-65 255.4 498 42.0
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 6.5e-65 252.7 515 37.1
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 8.5e-65 252.3 474 39.9
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.6e-63 248.1 458 40.0
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 2.1e-63 247.7 494 40.3
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 2.1e-63 247.7 494 40.3
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 4.6e-63 246.5 492 38.4
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 8.8e-62 242.3 456 38.8
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 2.0e-61 241.1 460 37.8
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 5.7e-61 239.6 499 51.3
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 7.4e-61 239.2 470 39.6
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 7.4e-61 239.2 470 39.6
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 7.4e-61 239.2 445 42.0
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.5e-58 231.5 503 40.0
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.0e-57 228.8 469 37.5
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.7e-57 228.0 507 37.7
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 5.5e-56 223.0 450 36.9
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.2e-55 221.9 454 39.6
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.6e-55 221.5 454 39.2
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.6e-55 221.5 482 36.5
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.1e-55 221.1 481 36.4
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 2.1e-55 221.1 496 37.1
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.7e-55 220.7 463 37.6
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 6.7e-54 216.1 464 37.7
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.1e-53 215.3 466 37.3
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 4.8e-52 209.9 497 38.0
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.8e-52 209.9 561 47.4
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.8e-51 208.0 499 39.7
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.4e-51 207.6 469 38.0
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 9.1e-51 205.7 474 36.3
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.2e-50 205.3 456 35.7
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.7e-49 201.4 539 36.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 2.9e-49 200.7 525 45.1
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.9e-49 200.7 470 46.0
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 3.8e-49 200.3 466 35.2
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 5.0e-49 199.9 578 32.2
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 6.5e-49 199.5 503 35.6
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.9e-48 198.0 519 33.7
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.2e-48 197.2 501 35.5
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 2.1e-47 194.5 442 36.7
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.1e-47 194.5 504 33.7
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 8.0e-47 192.6 487 50.7
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.4e-46 191.8 469 33.9
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.4e-46 191.8 469 33.9
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 5.2e-46 189.9 435 40.9
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 5.2e-46 189.9 491 35.6
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 6.7e-46 189.5 556 44.8
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.8e-46 189.1 421 39.0
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.2e-45 188.7 474 35.4
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.0e-45 188.0 488 35.9
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.5e-45 186.0 548 31.8
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.3e-44 185.3 418 38.5
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.3e-44 185.3 539 32.3
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.8e-44 184.1 520 33.5
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 6.3e-44 183.0 536 34.0
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.9e-42 176.4 539 31.5
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 7.7e-42 176.0 530 44.7
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 5.0e-41 173.3 513 35.3
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 8.5e-41 172.6 551 43.9
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 8.5e-41 172.6 504 31.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 3.2e-40 170.6 598 31.4
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 5.5e-40 169.9 435 36.6
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.2e-40 169.5 536 32.6
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-39 168.7 509 33.8
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.6e-39 168.3 552 43.3
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 2.1e-39 167.9 455 33.2
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.7e-39 167.5 442 34.2
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 3.6e-39 167.2 457 35.2
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 4.7e-39 166.8 459 41.8
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 6.1e-39 166.4 536 30.2
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 8.0e-39 166.0 573 31.9
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.0e-38 165.6 568 33.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.2e-38 163.3 598 31.6
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-37 162.2 501 33.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.0e-37 161.4 527 31.9
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 2.0e-37 161.4 531 29.9
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 5.7e-37 159.8 484 41.5
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.1e-35 155.6 525 39.0
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.1e-35 155.6 525 39.0
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 5.4e-35 153.3 598 29.3
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.7e-34 151.0 529 38.0
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 4.5e-34 150.2 486 45.1
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 7.7e-34 149.4 485 43.7
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 7.7e-34 149.4 512 42.0
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.3e-33 147.9 496 42.5
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 3.8e-33 147.1 512 42.0
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.1e-32 145.6 384 43.2
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 9.5e-32 142.5 488 30.5
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 4.7e-31 140.2 212 45.8
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 6.1e-31 139.8 537 31.8
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 8.0e-31 139.4 520 42.9
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.4e-30 138.7 548 31.6
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 2.0e-29 134.8 465 30.8
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.4e-29 133.7 471 31.4
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 4.4e-29 133.7 471 30.1
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.7e-28 131.7 552 40.9
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 4.9e-28 130.2 172 47.7
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 6.3e-28 129.8 388 31.7
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.8e-27 128.3 502 31.5
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 7.8e-26 122.9 495 27.7
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.7e-25 121.7 501 28.7
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 1.7e-25 121.7 497 28.6
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.3e-25 121.3 411 31.1
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 3.8e-25 120.6 149 48.3
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 5.0e-25 120.2 477 37.3
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 6.6e-25 119.8 181 43.1
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 8.6e-25 119.4 482 29.9
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 9.5e-24 115.9 118 59.3
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.7e-23 113.6 154 48.7
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 8.9e-22 109.4 516 29.3
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.2e-20 104.8 515 30.1
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.9e-20 104.4 581 28.4
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 8.3e-20 102.8 482 28.6
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 7.0e-19 99.8 463 28.5
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.6e-18 98.6 381 27.0
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 2.0e-18 98.2 136 47.1
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 4.6e-18 97.1 510 40.6
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 5.9e-18 96.7 485 28.5
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 5.0e-17 93.6 484 28.5
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.5e-16 92.0 482 29.0
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.5e-16 91.3 484 28.5
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 4.3e-16 90.5 519 28.5
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.1e-14 85.9 154 39.6
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 2.3e-14 84.7 473 27.1
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 8.9e-14 82.8 501 27.1
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.4e-13 80.9 132 39.4
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 4.4e-13 80.5 159 39.0
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.2e-12 78.2 127 40.9
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 4.9e-12 77.0 468 27.1
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.4e-11 74.7 505 26.3
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 9.2e-11 72.8 486 25.9
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.6e-10 72.0 142 35.9
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 2.0e-10 71.6 216 32.9
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 2.7e-10 71.2 141 39.7
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 6.0e-10 70.1 582 25.1
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 7.8e-10 69.7 463 24.8
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.0e-09 69.3 155 37.4
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 1.7e-09 68.6 533 27.6
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 2.3e-09 68.2 472 27.1
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 3.9e-09 67.4 165 46.1
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 6.6e-09 66.6 68 67.6
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.5e-08 64.7 465 26.5
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.5e-08 64.7 437 32.3
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 3.3e-08 64.3 160 37.5
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 2.1e-07 61.6 142 38.0
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 8.1e-07 59.7 143 33.6
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.3e-06 58.2 495 25.9
Pp3c20_3960 Physcomitrium patens HOM05D025130 ORTHO05D030134 6.8e-06 56.6 121 37.2
Pp3c20_4020 Physcomitrium patens HOM05D025130 ORTHO05D030134 6.8e-06 56.6 121 37.2
Atru.chr6.1386 Acer truncatum HOM05D017445 ORTHO05D018150 8.9e-06 56.2 143 36.4


User provided reference genes

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