Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 5.6e-209 730.7 373 100.0
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 8.6e-202 706.8 373 97.3
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.1e-201 706.4 369 98.1
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.3e-201 703.7 369 97.0
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 6.9e-199 697.2 376 95.7
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 5.5e-180 634.4 382 86.6
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 4.5e-158 561.6 383 77.8
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 8.8e-154 547.4 383 76.8
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 9.4e-140 500.7 377 73.2
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 2.0e-137 493.0 389 71.5
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.9e-134 481.5 400 68.5
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.9e-132 476.5 400 67.8
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.2e-132 475.7 385 69.6
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 6.1e-131 471.5 375 70.7
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 8.0e-131 471.1 374 68.4
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.2e-130 468.4 376 69.7
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.0e-129 466.5 375 70.1
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 5.7e-129 464.9 389 67.6
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 2.8e-128 462.6 374 67.9
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 5.4e-127 458.4 384 67.4
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 7.0e-127 458.0 385 67.8
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 2.0e-126 456.4 382 67.5
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 2.7e-126 456.1 373 66.8
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 4.5e-126 455.3 383 65.5
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 5.0e-125 451.8 372 65.3
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 2.5e-124 449.5 380 67.1
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 3.2e-124 449.1 380 66.3
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 9.5e-124 447.6 375 67.2
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 3.6e-123 445.7 382 68.3
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 3.6e-123 445.7 378 65.6
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 1.0e-122 444.1 383 65.0
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.2e-121 440.7 377 65.0
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.2e-121 440.7 389 64.0
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.4e-121 438.7 389 63.8
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 4.9e-120 435.3 363 66.9
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 4.9e-120 435.3 373 64.3
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 6.3e-120 434.9 383 63.7
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 3.1e-119 432.6 380 64.2
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 4.1e-119 432.2 388 64.2
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 9.2e-119 431.0 374 65.2
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.6e-118 430.3 374 63.9
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 2.0e-118 429.9 370 65.7
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 3.5e-118 429.1 386 64.2
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 5.9e-118 428.3 388 62.4
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 1.0e-117 427.6 367 64.6
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 8.6e-117 424.5 370 65.7
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 2.5e-116 422.9 394 62.2
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.8e-115 419.5 390 62.8
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 3.6e-115 419.1 394 61.7
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 1.8e-114 416.8 382 62.0
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 2.3e-114 416.4 394 61.4
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 3.0e-114 416.0 370 63.8
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 4.0e-114 415.6 370 64.6
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 4.0e-114 415.6 394 61.7
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 6.8e-114 414.8 377 63.4
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 8.9e-114 414.5 394 62.2
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 3.4e-113 412.5 370 61.9
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 4.4e-113 412.1 370 64.1
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.4e-113 412.1 370 64.1
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 4.4e-113 412.1 371 63.1
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 4.4e-113 412.1 384 62.5
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 2.2e-112 409.8 384 61.2
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 2.2e-112 409.8 374 65.0
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 3.7e-112 409.1 389 62.7
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 4.9e-112 408.7 384 63.0
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 1.8e-111 406.8 374 60.7
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 3.9e-109 399.1 383 60.6
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 1.1e-108 397.5 397 58.2
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 4.3e-108 395.6 396 59.6
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 5.6e-108 395.2 382 60.2
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.2e-107 394.0 397 57.7
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.1e-106 391.0 338 65.7
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 5.2e-106 388.7 395 57.7
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 1.4e-103 380.6 380 59.5
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 2.4e-103 379.8 380 59.7
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.4e-103 379.8 346 62.4
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 4.1e-103 379.0 390 57.2
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 1.0e-101 374.4 346 64.2
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 3.0e-101 372.9 370 61.4
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 5.6e-100 368.6 372 58.1
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 1.2e-99 367.5 378 56.1
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 2.3e-98 363.2 375 57.9
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 3.1e-98 362.8 371 58.0
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 5.2e-98 362.1 382 58.6
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 1.5e-97 360.5 375 58.4
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 3.4e-97 359.4 379 58.6
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 7.5e-97 358.2 376 58.0
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 7.5e-97 358.2 376 58.0
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 7.5e-97 358.2 373 56.3
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 9.9e-97 357.8 374 57.5
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 1.7e-96 357.1 374 56.4
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 2.9e-96 356.3 374 57.2
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 2.9e-96 356.3 375 57.9
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 3.7e-96 355.9 374 57.2
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 8.3e-96 354.8 373 56.3
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 1.1e-95 354.4 375 57.1
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 1.4e-95 354.0 373 56.8
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.1e-95 352.4 372 55.4
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 2.1e-94 350.1 375 56.5
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 4.6e-94 349.0 376 55.3
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 6.0e-94 348.6 370 57.0
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 1.7e-93 347.1 375 56.3
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 3.0e-93 346.3 279 69.2
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 5.1e-93 345.5 352 60.2
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 5.1e-93 345.5 352 60.2
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 7.3e-92 341.7 379 55.7
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 8.1e-91 338.2 375 56.0
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 4.0e-90 335.9 362 53.9
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 2.7e-86 323.2 399 51.1
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 5.1e-85 318.9 390 49.7
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.2e-81 307.8 367 52.9
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 2.0e-81 307.0 403 48.9
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 9.9e-81 304.7 343 50.7
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 1.6e-78 297.4 324 52.2
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.5e-78 296.2 284 59.5
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 4.8e-75 285.8 319 53.3
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 2.4e-66 256.9 253 54.9
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 7.6e-65 251.9 169 74.6
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 1.3e-64 251.1 370 43.2
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.8e-58 230.7 291 50.9
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.0e-58 229.6 291 50.5
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 8.5e-48 195.3 351 42.7
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 4.2e-47 193.0 212 56.6
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 6.1e-46 189.1 221 52.5
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 2.5e-44 183.7 206 55.3
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 5.9e-33 146.0 374 32.4
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 8.5e-32 142.1 140 65.0
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 6.1e-30 136.0 173 50.9
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 1.4e-29 134.8 279 34.4
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 3.0e-29 133.7 128 56.2
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 2.6e-28 130.6 82 78.0
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.1e-26 123.2 83 73.5
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 3.5e-25 120.2 168 51.2
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 4.4e-20 103.2 119 51.3
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 8.5e-16 89.0 118 45.8
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 9.4e-15 85.5 211 27.0
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 6.8e-13 79.3 109 43.1
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 5.4e-10 69.7 52 75.0
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.0e-09 67.8 243 27.6
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 6.6e-08 62.8 38 71.1
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 6.6e-08 62.8 75 53.3
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 5.5e-07 59.7 81 39.5
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 5.5e-07 59.7 70 54.3


User provided reference genes

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