Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 3.3e-84 315.1 170 100.0
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 1.5e-79 299.7 171 95.9
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 2.5e-79 298.9 170 94.7
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 8.8e-77 290.4 171 94.2
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.3e-75 286.6 184 88.6
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 1.6e-70 269.6 172 88.4
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 8.3e-51 204.1 139 77.0
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 2.4e-50 202.6 144 73.6
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 1.2e-46 190.3 138 68.8
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 1.6e-46 189.9 143 65.0
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 1.0e-45 187.2 144 68.8
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 1.0e-45 187.2 143 65.0
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 2.3e-45 186.0 174 63.8
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 2.6e-44 182.6 139 65.5
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 2.4e-42 176.0 171 60.8
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 1.2e-41 173.7 142 64.1
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 2.7e-41 172.6 138 63.0
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 4.6e-41 171.8 138 63.0
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 1.0e-40 170.6 142 64.1
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 1.7e-40 169.9 141 61.7
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 2.3e-40 169.5 171 55.0
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 1.5e-39 166.8 142 62.0
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 1.5e-39 166.8 142 62.0
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 4.3e-39 165.2 141 60.3
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 6.2e-38 161.4 172 62.2
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 2.3e-37 159.5 143 58.7
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 3.1e-37 159.1 147 60.5
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 4.0e-37 158.7 176 55.1
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 1.2e-36 157.1 142 56.3
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 7.5e-36 154.5 139 58.3
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 2.9e-35 152.5 147 57.1
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 1.4e-34 150.2 148 51.4
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 3.2e-34 149.1 139 56.1
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 7.1e-34 147.9 146 55.5
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 1.6e-33 146.7 164 56.1
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 1.3e-32 143.7 137 58.4
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 1.7e-32 143.3 148 53.4
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 6.6e-32 141.4 146 53.4
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 2.5e-31 139.4 130 56.9
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 4.3e-31 138.7 138 55.8
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 4.3e-31 138.7 138 55.8
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 4.3e-31 138.7 140 55.7
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 7.3e-31 137.9 180 52.8
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 9.5e-31 137.5 147 49.0
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 4.7e-30 135.2 137 53.3
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 6.2e-30 134.8 134 57.5
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 6.2e-30 134.8 134 59.0
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.8e-29 133.3 134 55.2
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 2.3e-29 132.9 130 54.6
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 2.3e-29 132.9 164 47.0
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 5.2e-29 131.7 140 53.6
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 6.8e-29 131.3 164 51.2
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 8.9e-29 131.0 166 50.6
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 1.5e-28 130.2 140 52.1
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 7.6e-28 127.9 140 52.1
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 7.6e-28 127.9 173 49.1
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 7.6e-28 127.9 140 52.1
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 1.3e-27 127.1 130 53.8
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 1.7e-27 126.7 140 51.4
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 1.7e-27 126.7 140 51.4
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 1.7e-27 126.7 112 58.9
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 2.2e-27 126.3 141 51.8
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 2.9e-27 125.9 138 50.7
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 2.9e-27 125.9 141 49.6
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 4.9e-27 125.2 142 51.4
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 6.4e-27 124.8 164 50.0
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 6.4e-27 124.8 164 50.0
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 6.4e-27 124.8 164 50.0
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 1.1e-26 124.0 164 49.4
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 1.4e-26 123.6 131 54.2
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 1.9e-26 123.2 114 58.8
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.9e-26 123.2 147 50.3
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 3.2e-26 122.5 164 49.4
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 3.2e-26 122.5 164 49.4
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 7.1e-26 121.3 139 51.1
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 9.2e-26 120.9 136 50.7
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 9.2e-26 120.9 140 51.4
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 6.0e-25 118.2 119 52.1
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 7.8e-25 117.9 123 53.7
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 5.1e-24 115.2 114 57.0
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 9.6e-23 110.9 128 50.0
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 2.1e-22 109.8 124 52.4
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 4.0e-21 105.5 104 58.7
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 8.9e-21 104.4 123 42.3
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 2.6e-20 102.8 97 54.6
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 2.6e-20 102.8 131 48.9
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 6.4e-19 98.2 93 64.5
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 1.9e-18 96.7 97 53.6
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 1.9e-18 96.7 97 53.6
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.9e-18 96.7 95 55.8
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.6e-17 93.6 94 53.2
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 2.7e-17 92.8 89 57.3
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 1.3e-16 90.5 90 51.1
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 5.6e-15 85.1 107 51.4
unitig_578.g16135 Utricularia gibba HOM05D003374 ORTHO05D009470 1.1e-13 80.9 94 44.7
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 1.5e-12 77.0 91 50.5
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 9.9e-12 74.3 85 51.8
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 1.7e-11 73.6 90 50.0
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 8.4e-11 71.2 122 42.6
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 1.4e-10 70.5 88 52.3
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 2.4e-10 69.7 63 55.6
Duzib145G0007 Durio zibethinus HOM05D003374 ORTHO05D009470 2.1e-09 66.6 61 57.4
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 8.7e-08 61.2 86 45.3


User provided reference genes

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