Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0994 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.6e-160 569.3 280 100.0
FAN11G1790 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.6e-158 562.0 280 98.9
FAN15G1785 Fragaria x ananassa HOM05D004516 ORTHO05D005194 7.5e-158 560.5 280 98.6
FAN06G3758 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.7e-157 559.3 280 98.9
FAN24G2568 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.2e-157 558.9 280 98.6
FAN03G0371 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.9e-157 558.5 280 98.6
FAN03G3119 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.9e-157 557.8 280 98.2
FAN09G3758 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.2e-156 555.1 280 97.9
FAN05G4935 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.8e-150 534.3 280 95.7
FvH4_3g44301 Fragaria vesca HOM05D004516 ORTHO05D005194 7.0e-148 527.3 279 92.5
FAN25G0689 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.1e-146 521.2 275 92.4
FAN13G0422 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.1e-145 520.0 275 92.7
FAN12G1193 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.3e-145 518.1 278 90.6
FAN23G1267 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.1e-143 513.5 278 90.6
FAN03G2899 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.7e-141 506.1 278 88.5
FAN07G1842 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.6e-139 498.0 275 89.1
FvH4_5g19180 Fragaria vesca HOM05D004516 ORTHO05D005194 5.8e-134 481.1 257 91.1
FvH4_6g21610 Fragaria vesca HOM05D004516 ORTHO05D005194 3.0e-130 468.8 258 89.5
FAN07G0029 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.9e-126 453.8 279 82.4
FAN03G0909 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.8e-120 434.9 278 79.5
FAN13G1456 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.4e-119 432.6 278 78.1
FAN17G2263 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.0e-115 417.9 258 79.1
FAN10G1624 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.3e-114 416.8 258 78.7
FAN10G0238 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.1e-114 414.8 275 78.2
FAN17G0177 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.1e-114 414.8 258 78.3
FAN09G1891 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.7e-114 414.5 258 78.3
FAN09G1624 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.9e-113 412.9 258 77.9
FAN15G2282 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.9e-113 412.9 258 77.5
FAN22G0748 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.9e-113 412.9 258 77.9
FAN10G1325 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.5e-113 412.5 258 77.9
FAN22G1451 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.3e-113 411.8 278 76.6
FAN12G4265 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.1e-112 409.5 258 77.5
FAN09G4587 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.5e-108 394.8 243 78.6
FAN02G2369 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.0e-106 389.0 258 77.5
FAN10G1093 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.1e-105 387.1 243 80.2
FAN16G1053 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.3e-105 385.6 278 72.7
FAN22G0239 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.6e-102 375.9 273 71.4
FAN24G2223 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.6e-96 356.7 258 70.5
FAN28G0122 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.5e-93 344.7 275 67.6
FAN09G3769 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.9e-92 343.2 228 77.2
FAN04G1692 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.5e-92 341.7 175 92.0
FAN24G3551 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.6e-91 339.0 278 65.5
FAN19G1339 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.6e-91 338.6 353 54.7
FAN23G1761 Fragaria x ananassa HOM05D004516 ORTHO05D005194 7.9e-91 337.8 175 97.7
FAN07G1174 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.3e-89 332.4 206 78.6
FAN21G3102 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.1e-87 325.9 278 63.7
FAN16G1822 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.2e-84 315.8 231 73.2
FAN26G2540 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.2e-83 313.9 165 89.1
FAN15G0769 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.6e-83 313.5 278 62.9
RcHm_v2.0_Chr4g0392971 Rosa chinensis HOM05D004516 ORTHO05D005194 1.6e-83 313.5 231 64.9
FAN09G3014 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.0e-82 310.8 278 62.2
FAN10G3675 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.3e-81 305.8 220 74.5
FAN15G3594 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.3e-81 305.8 182 84.1
FAN13G1629 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.1e-79 298.9 155 98.7
FAN07G0361 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.5e-78 297.0 180 82.2
FAN01G0148 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.5e-76 290.4 212 73.6
FAN10G0086 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.0e-75 284.6 200 75.0
FAN10G0672 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.0e-75 284.6 200 75.0
FAN10G4065 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.0e-75 284.6 200 75.0
FAN25G1657 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.0e-74 284.3 183 82.5
FAN13G2573 Fragaria x ananassa HOM05D004516 ORTHO05D000278 8.8e-74 281.2 160 88.1
FAN02G1419 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.1e-71 271.2 278 57.6
FAN01G1620 Fragaria x ananassa HOM05D004516 ORTHO05D005194 7.5e-65 251.5 171 74.9
FAN20G1447 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.8e-64 249.6 143 87.4
FAN10G0025 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-63 247.3 256 57.0
FAN14G1051 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.3e-61 240.7 144 83.3
FAN28G0245 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.5e-54 216.1 156 75.0
FAN28G1213 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.5e-54 216.1 156 75.0
FvH4_6g22213 Fragaria vesca HOM05D004516 ORTHO05D005194 5.5e-52 208.8 99 97.0
FAN16G1376 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.4e-49 199.1 153 65.4
FAN18G4542 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.7e-49 198.7 251 49.0
FAN28G2613 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.3e-48 197.6 99 92.9
FAN07G2126 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.9e-46 188.7 107 81.3
FAN14G0839 Fragaria x ananassa HOM05D004516 ORTHO05D045680 1.5e-44 184.1 234 51.3
RcHm_v2.0_Chr6g0305091 Rosa chinensis HOM05D004516 ORTHO05D005194 4.3e-44 182.6 274 38.7
FAN19G1778 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.2e-42 175.6 273 38.8
FAN18G2686 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.4e-41 172.9 276 37.7
FAN23G1219 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.2e-40 170.2 106 81.1
FAN03G2119 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.9e-40 169.9 276 37.3
FAN02G1001 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-39 167.5 273 35.9
FAN14G3645 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-39 167.5 256 40.6
FAN05G3522 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.7e-38 163.3 123 73.2
FvH4_6g34882 Fragaria vesca HOM05D004516 ORTHO05D045680 3.5e-38 162.9 234 49.6
FAN14G3153 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.0e-37 159.8 251 38.6
FAN01G1218 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.9e-37 159.5 276 36.2
FAN11G1286 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.1e-35 151.8 250 36.8
FAN11G2926 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.4e-33 146.0 217 39.6
FAN09G1164 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.8e-33 145.6 273 34.1
FAN05G0424 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.2e-32 143.7 82 84.1
RcHm_v2.0_Chr5g0059411 Rosa chinensis HOM05D004516 ORTHO05D005194 2.2e-32 143.7 178 43.3
FAN28G0111 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.9e-32 143.3 89 80.9
FAN20G1866 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.7e-32 142.9 85 85.9
FAN11G3115 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.6e-30 137.5 199 38.7
FAN14G5934 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.1e-30 137.1 233 36.5
FAN06G1918 Fragaria x ananassa HOM05D004516 ORTHO05D005194 7.8e-30 135.2 222 37.4
FAN14G3922 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.9e-29 132.9 251 34.3
FAN25G0220 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.9e-28 130.6 217 38.7
FAN27G0566 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.5e-28 130.2 175 47.4
FAN03G2498 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.5e-28 128.3 76 84.2
FAN25G3605 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.1e-26 124.8 217 36.9
FAN17G2411 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.3e-26 123.6 269 32.3
FAN11G3175 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.0e-25 120.6 179 41.9
FAN04G1458 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.6e-25 120.2 84 77.4
FAN16G1746 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.8e-25 119.0 197 36.0
FAN25G0543 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.8e-25 119.0 272 33.5
FAN02G1389 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.9e-25 118.2 176 38.6
FAN16G0942 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.9e-25 118.2 168 37.5
FAN16G0694 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.9e-24 115.9 84 75.0
FAN02G2246 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.4e-24 115.5 205 37.6
FAN02G0941 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.2e-23 113.2 197 34.5
FAN03G2654 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.0e-22 109.0 62 80.6
FAN08G1224 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.3e-21 107.8 201 37.3
FAN28G1425 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.0e-21 106.7 175 35.4
FAN22G0207 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.0e-18 96.3 142 39.4
FAN24G3026 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.9e-16 90.1 101 41.6
FAN25G3465 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.9e-15 87.4 182 34.1
RcHm_v2.0_Chr7g0242211 Rosa chinensis HOM05D004516 ORTHO05D005194 3.2e-15 86.7 64 67.2
FAN06G0871 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.2e-15 86.3 183 35.0
FAN01G2695 Fragaria x ananassa HOM05D003861 ORTHO05D003172 2.7e-14 83.6 257 28.0
FAN10G2421 Fragaria x ananassa HOM05D003861 ORTHO05D003172 7.8e-14 82.0 257 28.0
FvH4_6g33100 Fragaria vesca HOM05D004516 ORTHO05D005194 1.0e-13 81.6 100 41.0
FAN25G0522 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.0e-13 81.6 157 31.2
FAN05G4879 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.7e-13 80.9 92 40.2
FAN07G0140 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.3e-13 80.5 115 36.5
Hma1.2p1_0921F.1_g236870 Hydrangea macrophylla HOM05D001576 ORTHO05D010219 5.1e-13 79.3 297 26.9
FAN07G1082 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.6e-13 79.0 195 28.7
FAN16G0564 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.6e-13 79.0 153 38.6
Prupe.4G233800 Prunus persica HOM05D004516 ORTHO05D005194 2.5e-12 77.0 190 30.5
Aqoxy3G01274 Aquilegia oxysepala HOM05D001576 ORTHO05D005194 9.6e-12 75.1 124 36.3
FAN23G1492 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.3e-11 74.7 39 84.6
FAN25G2950 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.1e-11 73.9 243 28.4
FAN05G4797 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.8e-11 73.6 111 38.7
FAN03G2067 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.1e-11 72.0 149 29.5
FAN12G3538 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-10 71.2 113 39.8
FAN24G1619 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.4e-10 70.5 152 34.9
FvH4_7g00330 Fragaria vesca HOM05D003861 ORTHO05D003172 4.0e-10 69.7 277 24.2
TWI38G0149 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 1.2e-09 68.2 170 31.2
FAN12G3269 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.5e-09 67.8 67 49.3
SGA_v2.0_scaffold176G39371 Striga asiatica HOM05D008413 ORTHO05D000401 1.5e-09 67.8 194 26.3
Atru.chr1.1934 Acer truncatum HOM05D008413 ORTHO05D000401 3.4e-09 66.6 199 23.6
FAN05G4171 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.4e-09 66.2 142 33.1
FAN24G2122 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.8e-09 65.9 113 39.8
FAN24G3296 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.8e-09 65.9 113 38.1
Carub.0001s4114 Capsella rubella HOM05D000589 ORTHO05D000401 9.9e-09 65.1 196 28.6
FvH4_5g34730 Fragaria vesca HOM05D003861 ORTHO05D003172 2.2e-08 63.9 277 23.8
MD02G1308300 Malus domestica HOM05D005145 ORTHO05D006062 3.8e-08 63.2 172 27.3
CSS0004599 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.4e-08 62.4 126 27.8
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 8.4e-08 62.0 236 27.5
TWI34G0394 Tripterygium wilfordii HOM05D014549 ORTHO05D000401 1.1e-07 61.6 170 29.4
CSS0008946 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.4e-07 61.2 238 23.5
Atru.chr1.2141 Acer truncatum HOM05D008413 ORTHO05D000401 1.9e-07 60.8 221 24.0
FAN18G3027 Fragaria x ananassa HOM05D003861 ORTHO05D003172 1.9e-07 60.8 241 24.9
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 2.4e-07 60.5 128 25.8
CSS0008814 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.2e-07 60.1 238 23.5
CSS0023642 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.2e-07 60.1 238 23.5
CSS0041053 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.2e-07 60.1 238 23.5
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.2e-07 60.1 128 25.8
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.2e-07 60.1 128 25.8
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.2e-07 59.7 128 25.8
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.2e-07 59.7 128 25.8
FAN25G0014 Fragaria x ananassa HOM05D003861 ORTHO05D003172 4.2e-07 59.7 251 25.9
PSO384G2190 Papaver somniferum HOM05D008413 ORTHO05D000401 5.4e-07 59.3 117 27.4
CSS0011061 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 7.1e-07 58.9 233 23.6
Rhsim03G0135600 Rhododendron simsii HOM05D001576 ORTHO05D010219 7.1e-07 58.9 277 24.2
FAN15G0265 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.3e-07 58.5 83 39.8
CSS0049636 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.7e-06 57.0 126 26.2
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 3.5e-06 56.6 129 25.6
AUR62037893 Chenopodium quinoa HOM05D000816 ORTHO05D001425 4.6e-06 56.2 242 24.0
FAN05G4694 Fragaria x ananassa HOM05D003861 ORTHO05D003172 4.6e-06 56.2 196 27.0
FAN18G1278 Fragaria x ananassa HOM05D003861 ORTHO05D003172 4.6e-06 56.2 277 23.1
FAN21G3184 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.6e-06 56.2 95 38.9


User provided reference genes

Program Settings