Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.9e-305 1051.2 577 100.0
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.6e-300 1035.4 577 98.4
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.2e-295 1019.2 577 96.9
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 4.3e-285 984.2 577 94.8
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.6e-284 982.2 577 95.0
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 8.8e-270 933.3 575 88.9
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-229 800.0 586 74.6
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.1e-224 783.5 579 72.5
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 3.3e-224 781.9 578 73.9
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.1e-219 765.0 579 73.7
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 6.0e-210 734.6 579 72.9
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.9e-209 731.9 579 72.7
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 5.8e-205 718.0 579 67.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.9e-203 713.0 578 66.6
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 7.1e-203 711.1 582 67.9
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 3.1e-198 695.7 594 66.2
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.3e-193 680.2 576 63.7
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 3.9e-193 678.7 573 65.4
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 5.6e-192 674.9 574 63.4
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 5.6e-192 674.9 575 64.9
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.1e-190 670.6 573 64.2
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 2.4e-190 669.5 573 65.3
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 2.4e-190 669.5 574 65.2
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 6.9e-190 667.9 578 62.8
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 6.9e-190 667.9 574 64.8
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.5e-189 665.2 574 64.8
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 9.9e-189 664.1 574 61.7
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 7.9e-186 654.4 573 63.4
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.8e-185 653.3 582 60.8
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 3.9e-185 652.1 582 62.5
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 8.7e-185 651.0 574 61.7
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.5e-184 650.2 573 63.4
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 3.3e-184 649.0 576 62.7
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 5.6e-184 648.3 582 60.3
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 9.6e-184 647.5 575 61.7
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 2.8e-183 646.0 579 60.6
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.8e-182 643.3 577 60.8
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.0e-182 642.1 575 61.7
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 4.0e-182 642.1 574 61.3
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.3e-180 637.1 581 61.6
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.9e-180 636.0 569 61.0
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 6.5e-180 634.8 575 60.0
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.1e-179 634.0 572 59.8
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 1.1e-179 634.0 581 60.1
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.9e-176 623.2 577 60.1
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.9e-176 623.2 579 61.0
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.5e-176 622.9 571 59.9
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 7.4e-176 621.3 571 60.1
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 9.7e-176 620.9 577 59.1
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.6e-175 620.2 575 57.7
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 2.2e-175 619.8 571 59.7
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 4.8e-175 618.6 575 60.3
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.4e-174 617.1 655 54.2
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.8e-174 616.7 572 59.3
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 5.3e-174 615.1 577 58.1
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.2e-173 614.0 575 59.3
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.7e-172 610.1 581 57.0
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 2.2e-172 609.8 576 58.9
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 6.5e-172 608.2 572 59.1
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 3.2e-171 605.9 582 57.9
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.1e-170 603.2 578 56.9
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 1.8e-169 600.1 580 57.2
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 2.5e-168 596.3 581 58.0
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 2.5e-168 596.3 577 57.0
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 2.5e-168 596.3 578 58.8
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 4.3e-168 595.5 578 57.6
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.7e-167 593.6 521 64.3
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.8e-167 592.8 572 56.8
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 1.1e-166 590.9 580 56.7
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 4.1e-166 589.0 575 59.3
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 2.0e-165 586.6 576 56.9
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 4.5e-165 585.5 572 59.3
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 2.9e-164 582.8 578 55.7
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 2.9e-164 582.8 581 56.5
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.1e-163 580.9 597 56.3
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 2.5e-163 579.7 589 57.0
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 2.5e-163 579.7 597 57.0
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 3.2e-163 579.3 576 58.0
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 3.2e-163 579.3 569 55.7
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.2e-162 577.4 577 54.2
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 4.7e-162 575.5 579 56.0
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.7e-162 575.5 517 68.3
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 7.9e-162 574.7 579 57.9
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 8.8e-161 571.2 575 55.5
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 2.2e-159 566.6 582 55.2
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 4.8e-159 565.5 568 54.6
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 8.2e-159 564.7 583 53.9
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 7.7e-157 558.1 583 56.4
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 2.2e-156 556.6 581 55.8
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 2.9e-156 556.2 575 52.3
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 5.0e-156 555.4 571 53.8
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 2.7e-154 549.7 577 56.0
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 2.7e-154 549.7 580 55.3
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 3.6e-154 549.3 577 56.0
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 3.6e-154 549.3 584 56.0
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 8.0e-154 548.1 586 54.8
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.4e-153 547.4 584 55.5
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 2.6e-152 543.1 591 54.5
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 7.0e-150 535.0 582 52.7
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 2.2e-148 530.0 584 52.1
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 8.2e-143 511.5 598 50.7
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-137 494.2 481 65.7
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 4.0e-137 492.7 567 47.8
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.7e-135 487.3 573 51.8
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.1e-134 484.6 462 58.0
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 7.7e-133 478.4 429 62.2
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.6e-132 475.3 441 60.8
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 1.1e-126 458.0 574 47.4
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 8.6e-124 448.4 446 58.3
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 6.8e-121 438.7 573 44.2
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-119 433.7 496 59.7
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 2.3e-116 423.7 576 44.1
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.0e-116 422.5 316 69.9
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 1.5e-115 421.0 577 44.5
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 4.7e-114 416.0 297 73.4
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 5.4e-110 402.5 359 60.7
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 9.5e-107 391.7 578 40.8
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.6e-104 383.6 236 90.7
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 1.5e-99 367.9 579 40.1
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 4.3e-99 366.3 572 39.5
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 1.9e-94 350.9 403 53.8
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 1.7e-87 327.8 514 43.2
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 6.9e-81 305.8 547 40.4
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 9.0e-81 305.4 241 69.7
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 2.4e-78 297.4 324 52.2
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 8.1e-74 282.3 352 48.3
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-68 265.4 289 59.5
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.5e-67 260.8 173 73.4
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.8e-60 238.0 158 75.3
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 9.0e-57 225.7 426 35.2
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 5.0e-55 219.9 132 87.1
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-51 208.4 155 73.5
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-50 204.9 119 89.9
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-49 201.4 119 88.2
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.8e-44 184.9 140 67.9
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 3.0e-44 184.1 165 76.4
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 3.0e-44 184.1 165 69.7
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 4.1e-41 173.7 172 73.3
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-39 168.3 354 35.9
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 8.5e-39 166.0 139 57.6
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-37 161.0 157 72.6
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 8.0e-29 132.9 104 72.1
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 8.8e-28 129.4 90 77.8
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 3.5e-24 117.5 112 58.0
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-23 113.6 198 38.9
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 4.4e-19 100.5 102 47.1
RcHm_v2.0_Chr1g0314551 Rosa chinensis HOM05D004469 ORTHO05D342664 7.5e-19 99.8 114 69.3
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 4.2e-14 84.0 70 62.9
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 3.6e-13 80.9 43 90.7
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 6.8e-12 76.6 72 52.8
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 4.4e-11 73.9 40 92.5
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 9.8e-11 72.8 59 64.4
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-10 72.4 52 75.0
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 6.3e-10 70.1 61 57.4
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-09 69.3 36 91.7
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.0e-09 66.6 46 69.6
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 1.0e-07 62.8 54 59.3
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 2.9e-07 61.2 42 66.7
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 5.6e-06 57.0 43 62.8


User provided reference genes

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