Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.3e-95 351.7 174 100.0
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.9e-93 344.0 174 98.3
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.5e-92 342.8 174 97.7
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-92 342.8 174 97.7
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.7e-88 327.0 188 88.8
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 8.4e-75 283.9 173 84.4
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 7.9e-73 277.3 165 83.6
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.5e-71 272.3 172 82.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.1e-63 246.9 172 73.3
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 7.4e-63 244.2 171 71.9
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 7.4e-63 244.2 171 71.9
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 7.4e-63 244.2 170 71.2
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 9.7e-63 243.8 171 73.1
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.7e-62 243.0 171 71.3
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.7e-62 241.9 169 71.6
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 4.1e-61 238.4 170 69.4
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 5.3e-61 238.0 167 73.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.2e-60 236.9 170 70.0
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.0e-60 236.1 168 70.2
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 5.9e-60 234.6 163 73.0
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 7.7e-60 234.2 168 71.4
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 7.7e-60 234.2 167 71.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.0e-59 233.8 172 70.9
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.7e-59 233.0 166 71.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.9e-59 232.3 168 66.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 3.8e-59 231.9 169 69.2
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.5e-59 231.1 164 70.7
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-58 230.3 165 70.9
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.1e-58 230.3 168 67.9
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-58 230.3 169 70.4
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.4e-58 229.9 169 69.8
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.9e-58 229.6 168 67.9
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.9e-58 229.6 168 67.9
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.9e-58 229.6 171 68.4
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-58 229.6 165 70.3
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.9e-58 229.6 168 68.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.5e-58 229.2 167 70.7
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.2e-58 228.4 168 69.6
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 5.5e-58 228.0 161 70.8
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.5e-58 228.0 165 67.9
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.5e-58 228.0 167 67.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.2e-58 227.6 168 67.9
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 7.2e-58 227.6 168 67.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 9.4e-58 227.3 161 70.2
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.2e-57 226.9 169 68.6
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.2e-57 226.9 168 67.3
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.2e-57 226.9 168 67.3
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.6e-57 226.5 168 69.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.6e-57 226.5 162 70.4
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.6e-57 226.5 165 68.5
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 2.1e-57 226.1 161 70.2
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 3.6e-57 225.3 161 70.2
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.7e-57 224.9 168 66.1
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 4.7e-57 224.9 161 69.6
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 6.1e-57 224.6 161 69.6
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 6.1e-57 224.6 161 69.6
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 6.1e-57 224.6 162 69.8
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 6.1e-57 224.6 161 69.6
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 6.1e-57 224.6 166 68.7
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.0e-56 223.8 163 69.9
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.0e-56 223.8 167 67.7
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.4e-56 223.4 165 66.7
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.4e-56 223.4 165 67.3
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.4e-56 223.4 168 66.7
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.8e-56 223.0 161 68.9
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.8e-56 223.0 161 68.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.8e-56 223.0 161 68.9
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.8e-56 223.0 160 70.0
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.8e-56 223.0 168 64.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.8e-56 223.0 169 66.9
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.3e-56 222.6 166 67.5
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.3e-56 222.6 169 65.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 3.9e-56 221.9 172 67.4
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.1e-56 221.5 171 65.5
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 6.7e-56 221.1 168 66.7
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 8.8e-56 220.7 168 66.1
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 8.8e-56 220.7 171 66.7
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.1e-55 220.3 161 68.3
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.1e-55 220.3 168 65.5
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.5e-55 219.9 168 64.9
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.5e-55 219.9 161 67.1
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.0e-55 219.5 168 66.7
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.0e-55 219.5 168 66.7
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.6e-55 219.2 165 67.9
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.3e-55 218.8 168 64.3
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 4.4e-55 218.4 160 66.9
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.4e-55 218.4 160 66.9
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.4e-55 218.4 168 64.3
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 5.7e-55 218.0 166 66.9
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 5.7e-55 218.0 167 67.1
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 5.7e-55 218.0 167 67.7
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.7e-55 218.0 166 68.7
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 9.7e-55 217.2 168 64.3
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.3e-54 216.9 151 70.9
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.7e-54 216.5 169 63.9
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.7e-54 216.5 160 67.5
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.7e-54 216.5 160 68.1
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.2e-54 216.1 168 65.5
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.2e-54 216.1 165 66.7
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.8e-54 215.7 167 65.3
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.8e-54 215.7 163 65.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 3.7e-54 215.3 168 63.1
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 3.7e-54 215.3 168 63.7
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.7e-54 215.3 160 69.4
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 4.8e-54 214.9 165 65.5
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.4e-53 213.4 168 63.7
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.8e-53 213.0 168 63.1
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.8e-53 213.0 170 63.5
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 4.1e-53 211.8 160 68.8
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 4.1e-53 211.8 165 66.1
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 4.1e-53 211.8 160 66.2
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 4.1e-53 211.8 170 63.5
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 6.9e-53 211.1 168 62.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 9.1e-53 210.7 167 64.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.0e-52 209.5 169 62.1
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.6e-52 209.1 168 61.3
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 3.4e-52 208.8 160 64.4
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.9e-52 208.0 167 62.9
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 2.2e-51 206.1 164 62.2
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.8e-51 205.3 165 63.6
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.0e-51 204.9 161 67.1
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 5.0e-51 204.9 168 60.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 5.0e-51 204.9 161 63.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 9.4e-50 200.7 167 58.7
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 9.4e-50 200.7 168 56.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.6e-49 199.9 160 62.5
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 4.7e-49 198.4 163 61.3
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.0e-48 197.2 169 59.8
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.0e-48 197.2 166 57.8
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.8e-48 196.4 160 58.1
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.8e-48 196.4 159 61.6
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.8e-48 196.4 166 57.2
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 5.2e-48 194.9 169 59.8
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 8.8e-48 194.1 160 58.1
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 2.6e-47 192.6 160 60.0
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 7.4e-47 191.0 160 60.0
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.2e-46 189.5 157 61.1
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.8e-46 189.1 168 58.3
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.3e-46 188.0 168 57.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.3e-46 188.0 169 59.2
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.1e-45 185.7 171 57.3
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.1e-45 184.1 128 68.8
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.3e-43 180.3 163 56.4
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.9e-43 179.1 160 55.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 6.5e-43 177.9 125 69.6
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.5e-42 176.8 162 54.9
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 2.5e-42 176.0 133 64.7
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.5e-42 176.0 133 64.7
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.2e-42 175.6 165 57.6
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.5e-42 174.9 123 71.5
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.7e-41 172.6 168 56.0
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.3e-40 169.5 127 66.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.7e-38 162.2 124 64.5
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 8.2e-38 161.0 142 53.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 8.2e-38 161.0 139 59.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.6e-36 156.8 124 62.9
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.1e-33 146.4 105 68.6
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.1e-33 146.4 154 54.5
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.4e-32 143.7 162 53.1
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.0e-32 142.5 168 48.8
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 9.1e-29 131.0 168 45.8
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.7e-28 129.4 144 46.5
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.5e-28 129.0 168 45.2
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.9e-28 128.3 116 58.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.7e-28 127.9 168 45.2
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.8e-27 125.6 90 70.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.2e-25 120.6 95 68.4
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.0e-23 113.2 71 73.2
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.7e-22 110.2 164 43.3
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.4e-21 106.3 92 57.6
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.3e-19 100.5 93 52.7
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.7e-14 82.4 84 48.8
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.8e-12 74.7 49 73.5
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.1e-10 70.9 122 36.9
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 3.1e-08 62.8 178 28.1
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-07 60.8 46 63.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-07 60.8 69 44.9
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 2.6e-07 59.7 180 30.0
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 2.9e-06 56.2 57 52.6


User provided reference genes

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