Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.2e-159 564.3 282 100.0
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 9.3e-156 553.5 284 97.9
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 3.5e-155 551.6 282 98.2
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.2e-152 540.8 284 96.1
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.6e-134 480.7 254 94.9
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 4.2e-116 421.8 314 75.5
FAN28G1691 Fragaria x ananassa HOM05D003715 ORTHO05D003958 9.2e-63 244.6 137 91.2
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 1.5e-57 227.3 323 49.2
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 1.9e-55 220.3 314 48.1
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 3.5e-54 216.1 306 49.0
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 2.1e-43 180.3 320 42.8
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 3.6e-43 179.5 319 43.3
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 3.6e-43 179.5 321 43.3
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 6.2e-43 178.7 296 40.9
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 1.1e-42 177.9 301 42.5
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 3.4e-41 172.9 302 42.1
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.4e-39 167.5 315 41.0
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.9e-39 167.2 319 37.6
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 7.1e-39 165.2 306 44.1
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 7.1e-39 165.2 323 41.5
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 7.1e-39 165.2 323 41.5
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 9.3e-39 164.9 315 40.6
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.1e-38 163.7 293 41.6
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.6e-38 162.5 324 41.4
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 7.8e-38 161.8 323 40.2
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.3e-35 154.5 327 41.3
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 4.8e-35 152.5 300 38.3
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 6.2e-35 152.1 306 38.9
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.1e-34 151.4 308 38.3
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.1e-34 151.4 298 37.6
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 1.1e-34 151.4 298 41.9
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.8e-34 150.6 307 39.1
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 5.3e-34 149.1 296 37.5
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 9.0e-34 148.3 319 39.2
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 9.0e-34 148.3 293 38.9
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.5e-33 147.5 323 42.1
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 1.5e-33 147.5 295 38.3
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 2.0e-33 147.1 314 39.2
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.6e-33 146.7 296 37.8
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 3.4e-33 146.4 304 38.5
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 2.2e-32 143.7 295 38.3
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 2.9e-32 143.3 300 38.0
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 3.8e-32 142.9 306 38.9
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 6.4e-32 142.1 289 40.1
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 1.4e-31 141.0 297 39.1
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.4e-31 141.0 308 37.7
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 1.9e-31 140.6 297 37.4
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 4.2e-31 139.4 286 39.2
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 4.2e-31 139.4 315 35.6
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 5.4e-31 139.0 304 39.8
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 9.3e-31 138.3 311 35.4
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 3.5e-30 136.3 282 37.2
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 7.9e-30 135.2 309 37.9
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.3e-29 134.4 288 38.2
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.0e-29 133.3 289 36.3
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 3.0e-29 133.3 302 37.4
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.9e-29 132.9 236 45.8
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 3.9e-29 132.9 293 37.2
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 5.1e-29 132.5 301 36.9
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 6.6e-29 132.1 306 37.3
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.1e-28 131.3 307 40.4
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.1e-28 131.3 293 36.9
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.5e-28 131.0 290 36.6
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.9e-28 130.6 282 36.5
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 4.3e-28 129.4 285 40.0
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 2.1e-27 127.1 300 35.3
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 2.1e-27 127.1 297 36.4
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 2.8e-27 126.7 308 36.4
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 6.2e-27 125.6 310 34.8
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 6.2e-27 125.6 318 34.0
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 6.2e-27 125.6 291 34.4
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 8.1e-27 125.2 306 36.3
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 1.1e-26 124.8 300 36.3
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 1.4e-26 124.4 300 38.0
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 3.1e-26 123.2 290 34.1
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 4.0e-26 122.9 288 34.7
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 4.0e-26 122.9 317 35.0
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 5.3e-26 122.5 261 36.8
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 6.9e-26 122.1 284 37.7
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 6.9e-26 122.1 292 33.2
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.2e-25 121.3 294 35.0
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.2e-25 121.3 318 35.2
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-25 120.9 286 34.6
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 3.4e-25 119.8 298 35.9
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 4.5e-25 119.4 289 32.9
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 7.6e-25 118.6 294 34.0
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.3e-24 117.9 293 34.5
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.7e-24 117.5 293 34.8
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 3.8e-24 116.3 283 36.4
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 4.9e-24 115.9 290 34.5
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 4.9e-24 115.9 293 34.8
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.4e-24 115.5 306 34.0
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.4e-24 115.2 296 34.5
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.1e-23 114.8 292 32.2
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.1e-23 114.8 305 33.4
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.4e-23 114.4 289 35.6
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.4e-23 113.6 287 35.2
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 3.2e-23 113.2 300 34.0
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 4.2e-23 112.8 296 33.8
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 7.1e-23 112.1 326 33.7
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 9.3e-23 111.7 296 31.8
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 1.2e-22 111.3 289 33.2
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 1.2e-22 111.3 289 33.2
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 1.2e-22 111.3 289 33.2
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 1.2e-22 111.3 289 33.2
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 1.2e-22 111.3 299 32.8
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-22 110.5 285 33.3
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 2.1e-22 110.5 165 47.3
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 6.0e-22 109.0 291 34.0
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 7.9e-22 108.6 299 33.8
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 7.9e-22 108.6 311 34.1
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 5.1e-21 105.9 192 36.5
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 6.7e-21 105.5 293 33.1
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.7e-21 105.5 309 32.4
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 8.7e-21 105.1 289 34.6
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 8.7e-21 105.1 255 34.5
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 8.7e-21 105.1 293 32.1
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 1.1e-20 104.8 289 34.3
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 1.1e-20 104.8 303 35.0
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 1.9e-20 104.0 289 34.3
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.9e-20 104.0 301 32.2
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.9e-20 104.0 299 34.4
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 3.3e-20 103.2 296 35.1
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 3.3e-20 103.2 292 35.3
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 4.3e-20 102.8 187 38.0
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 4.3e-20 102.8 253 33.6
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 7.4e-20 102.1 289 33.6
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 9.6e-20 101.7 295 33.2
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.3e-19 101.3 274 36.5
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.6e-19 100.9 297 32.7
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 1.6e-19 100.9 297 32.7
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.6e-19 100.9 186 41.4
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.6e-19 100.9 254 34.6
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-19 100.5 198 35.4
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 2.1e-19 100.5 184 38.0
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 4.8e-19 99.4 292 31.5
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 6.2e-19 99.0 95 53.7
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 8.1e-19 98.6 290 30.3
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.1e-18 98.2 293 32.8
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.4e-18 97.8 308 33.1
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.8e-18 97.4 294 33.0
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.8e-18 97.4 294 33.0
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 4.0e-18 96.3 292 32.5
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 4.0e-18 96.3 316 30.7
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 4.0e-18 96.3 215 36.3
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 5.3e-18 95.9 239 35.1
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.0e-17 94.0 297 31.6
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 2.6e-17 93.6 163 41.1
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.3e-16 91.3 279 34.1
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.3e-16 91.3 178 42.1
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.7e-16 90.9 277 28.9
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 6.5e-16 89.0 296 29.7
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.4e-15 87.8 305 32.8
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 1.9e-15 87.4 283 29.3
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.2e-15 86.7 301 32.2
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.2e-15 86.3 289 31.5
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 5.5e-15 85.9 253 35.6
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 7.1e-15 85.5 114 46.5
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 7.1e-15 85.5 289 30.4
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.3e-13 81.3 282 31.6
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 1.8e-13 80.9 114 41.2
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 6.7e-13 79.0 107 42.1
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.1e-12 78.2 283 29.3
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.5e-12 77.8 301 28.2
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 1.5e-12 77.8 287 31.4
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 3.3e-12 76.6 293 31.1
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 9.6e-12 75.1 281 27.4
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 9.6e-12 75.1 290 29.7
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 2.8e-11 73.6 301 29.2
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 6.3e-11 72.4 280 27.5
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.5e-09 67.8 277 27.1
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.5e-09 67.8 92 42.4
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.6e-09 67.0 290 29.3
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.9e-08 63.5 290 28.6
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 3.8e-08 63.2 63 52.4
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 5.0e-08 62.8 90 45.6
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 1.1e-07 61.6 160 31.2
Zm00001eb160920 Zea mays HOM05D015210 ORTHO05D003958 2.5e-07 60.5 105 42.9
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 1.2e-06 58.2 146 30.8
Zm00001eb160980 Zea mays HOM05D015210 ORTHO05D003958 1.2e-06 58.2 93 41.9
Zm00001eb160930 Zea mays HOM05D015210 ORTHO05D003958 2.7e-06 57.0 92 42.4
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.6e-06 56.2 284 28.5
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 6.1e-06 55.8 252 26.6


User provided reference genes

Program Settings