Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.2e-212 741.5 372 100.0
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 5.4e-196 687.6 403 87.8
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 4.2e-180 634.8 403 81.6
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 8.2e-160 567.4 394 78.7
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.3e-154 549.3 403 75.2
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 1.4e-151 540.0 402 70.1
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.2e-147 526.9 403 68.0
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 4.7e-115 418.7 406 54.4
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 4.7e-115 418.7 400 56.8
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 1.2e-113 414.1 404 55.9
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 1.7e-112 410.2 405 54.1
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 2.2e-112 409.8 407 56.0
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.4e-111 407.1 405 54.3
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 3.1e-111 406.0 447 49.9
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 9.2e-111 404.4 411 53.0
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 3.6e-107 392.5 405 52.3
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 1.5e-105 387.1 401 53.9
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 2.0e-105 386.7 412 51.9
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 2.6e-105 386.3 403 51.6
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 2.6e-105 386.3 404 51.5
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.6e-105 386.3 398 52.3
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 9.8e-105 384.4 407 52.1
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 1.7e-104 383.6 410 52.0
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 8.3e-104 381.3 354 55.9
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 1.4e-103 380.6 389 53.2
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.4e-103 380.6 408 52.2
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 1.8e-103 380.2 410 52.0
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.6e-102 377.1 403 49.4
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 2.7e-102 376.3 401 52.1
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.0e-101 374.4 408 49.8
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.0e-101 374.4 408 50.5
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 1.3e-101 374.0 407 50.1
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 3.0e-101 372.9 404 50.7
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 5.0e-101 372.1 407 51.1
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 6.6e-101 371.7 403 48.9
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 8.6e-101 371.3 399 52.4
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 2.5e-100 369.8 403 50.9
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 3.3e-100 369.4 410 49.5
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 5.6e-100 368.6 407 49.9
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 5.6e-100 368.6 409 50.9
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 9.5e-100 367.9 453 46.8
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 9.5e-100 367.9 413 49.9
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 2.8e-99 366.3 404 50.2
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 3.6e-99 365.9 433 47.6
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 4.7e-99 365.5 405 50.1
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 1.4e-98 364.0 410 52.7
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 4.0e-98 362.5 413 48.9
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 5.2e-98 362.1 409 49.1
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 1.7e-96 357.1 406 47.8
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 8.3e-96 354.8 483 43.3
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.1e-95 354.4 414 48.3
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 9.2e-95 351.3 441 46.3
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 1.2e-94 350.9 417 48.4
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 6.0e-94 348.6 382 51.0
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 2.3e-93 346.7 428 47.0
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 5.0e-93 345.5 405 48.4
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 8.6e-93 344.7 368 51.4
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.2e-91 340.9 407 47.7
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 1.4e-90 337.4 396 47.7
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 2.6e-89 333.2 533 40.7
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 7.5e-89 331.6 332 52.4
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.7e-88 330.5 359 49.9
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 7.1e-87 325.1 407 46.9
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.7e-85 320.5 390 47.7
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 7.3e-84 315.1 400 46.5
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 3.6e-83 312.8 419 45.1
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 8.9e-82 308.1 328 53.4
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 7.6e-81 305.1 465 42.2
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 4.9e-80 302.4 394 44.7
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.1e-79 301.2 314 51.6
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 7.1e-79 298.5 314 53.5
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 1.2e-78 297.7 291 53.6
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 8.6e-77 291.6 383 47.0
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.5e-76 290.0 286 53.5
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.4e-73 279.3 277 55.2
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 1.3e-72 277.7 308 52.3
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 6.4e-72 275.4 540 37.4
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.1e-71 274.6 329 49.5
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 1.1e-71 274.6 305 50.2
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 3.2e-71 273.1 305 50.8
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 4.2e-71 272.7 400 42.8
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.2e-70 271.2 422 40.8
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 7.8e-70 268.5 315 48.6
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 3.9e-69 266.2 282 51.8
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.1e-68 264.6 301 50.8
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.6e-67 260.8 305 48.5
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.8e-67 260.0 284 51.8
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 7.6e-65 251.9 439 37.8
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.3e-64 251.1 321 45.2
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 1.3e-64 251.1 437 38.9
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.0e-61 240.0 423 35.7
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 6.7e-61 238.8 256 51.6
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 8.1e-59 231.9 277 47.7
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.4e-58 231.1 305 44.3
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.4e-58 230.3 372 40.3
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 3.1e-58 229.9 463 35.2
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 5.8e-57 225.7 307 44.0
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 1.7e-56 224.2 267 50.6
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 6.4e-56 222.2 260 48.5
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 8.2e-51 205.3 411 35.0
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.5e-47 193.7 207 50.7
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 7.1e-47 192.2 271 42.1
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.9e-45 186.4 127 69.3
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 1.1e-44 184.9 302 37.4
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.6e-41 173.7 334 35.3
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 7.2e-39 165.6 316 34.2
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.8e-37 161.0 321 34.9
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 1.7e-35 154.5 99 70.7
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 2.0e-33 147.5 265 34.3
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 2.0e-33 147.5 100 68.0
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 7.2e-31 139.0 253 36.4
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 3.0e-29 133.7 184 40.8
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.4e-26 124.8 84 67.9
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 1.8e-26 124.4 85 70.6
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 4.2e-23 113.2 283 29.3
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 1.4e-18 98.2 65 75.4
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 4.1e-18 96.7 67 64.2
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 2.6e-17 94.0 114 44.7
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 5.9e-17 92.8 185 36.8
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 9.4e-15 85.5 216 31.5
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 3.3e-12 77.0 86 46.5
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 7.5e-12 75.9 64 51.6
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.8e-11 73.2 70 57.1
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 8.2e-11 72.4 57 68.4
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.1e-10 72.0 87 49.4
FvH4_3g06910 Fragaria vesca HOM05D027109 ORTHO05D019758 1.9e-07 61.2 46 65.2
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 5.5e-07 59.7 74 44.6


User provided reference genes

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