Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2929.4 1486 100.0
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2595.1 1382 96.4
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 2550.0 1383 94.9
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2470.3 1326 95.7
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2382.8 1286 94.9
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 2196.8 1327 86.1
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1766.5 1339 70.3
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1721.1 1341 68.5
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1716.0 1339 67.5
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1358.2 1352 57.0
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1339.7 1349 56.4
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1332.4 1349 55.7
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1317.0 1357 53.9
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1305.0 1332 54.7
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1293.1 1355 54.6
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1266.5 1325 54.5
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1266.1 1323 53.8
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1252.7 1326 53.2
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1247.6 1354 52.9
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1245.3 1374 52.4
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1241.9 1348 52.8
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1241.5 1347 52.4
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1199.5 1362 50.9
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1185.6 1355 50.9
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1182.9 1359 51.1
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1177.5 1356 51.0
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1176.0 1356 51.0
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1163.3 1335 51.2
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1140.6 1329 50.5
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1127.9 1359 48.3
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1109.4 1344 48.8
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1100.9 1255 51.1
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1091.3 1343 48.4
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1077.8 1283 49.2
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 5.1e-311 1071.6 1481 44.9
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 9.4e-308 1060.8 1302 47.7
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 3.6e-307 1058.9 1354 46.2
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 1.1e-305 1053.9 1309 47.7
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 3.1e-303 1045.8 1309 47.0
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 1.7e-301 1040.0 1356 46.2
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 1.5e-300 1036.9 1368 46.0
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 4.2e-300 1035.4 1360 46.4
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 3.0e-298 1029.2 1302 47.1
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 2.2e-296 1023.1 1315 46.5
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 2.8e-296 1022.7 1313 46.4
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 4.8e-296 1021.9 1362 47.8
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 7.7e-294 1014.6 1332 45.6
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 5.2e-290 1001.9 1313 45.7
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 8.8e-290 1001.1 1285 45.6
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 2.6e-289 999.6 1337 45.5
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 3.4e-289 999.2 1216 47.2
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 4.8e-288 995.3 1332 45.7
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.1e-287 994.2 1330 44.9
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 2.4e-287 993.0 1200 49.3
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.4e-287 993.0 1282 45.6
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.7e-286 989.6 1310 45.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 4.2e-284 982.2 1229 46.3
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 7.2e-284 981.5 1335 44.4
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.7e-280 970.3 1315 45.3
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.8e-279 966.8 1338 43.6
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.8e-279 966.8 1308 44.7
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.3e-277 960.7 1350 43.3
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 4.3e-276 955.7 1325 43.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 2.8e-275 953.0 1324 44.0
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 7.0e-271 938.3 1373 43.2
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 5.6e-268 928.7 1236 44.6
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.5e-265 920.6 1360 43.5
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 6.0e-262 908.7 1337 42.1
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 1.8e-258 897.1 1324 42.7
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 3.2e-255 886.3 1341 41.6
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 3.0e-253 879.8 1305 42.3
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 3.0e-245 853.2 1347 41.7
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 3.3e-236 823.2 1316 40.3
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 4.3e-236 822.8 1329 39.6
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 4.2e-231 806.2 1345 40.6
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.0e-229 801.6 1349 40.5
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 6.0e-222 775.8 1351 39.5
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 6.1e-206 722.6 1255 40.2
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.1e-204 718.4 1307 36.7
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.8e-197 694.5 690 56.1
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.5e-196 691.4 705 54.5
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.4e-194 684.9 1086 40.9
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 8.0e-190 669.1 1257 35.9
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.0e-189 666.8 1305 36.6
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 6.8e-181 639.4 700 53.9
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 8.8e-181 639.0 1181 36.2
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 7.7e-177 625.9 1255 35.5
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 8.5e-176 622.5 925 41.4
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 7.2e-175 619.4 1182 36.4
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.7e-174 617.5 1301 35.0
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 9.5e-167 592.4 1071 37.0
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 6.8e-165 586.3 699 49.2
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 4.4e-164 583.6 1273 35.1
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 5.8e-156 556.6 1201 33.7
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.0e-152 545.8 649 47.9
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 3.2e-146 524.2 639 47.4
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 3.7e-139 500.7 726 43.0
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 6.4e-139 500.0 572 50.7
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 8.4e-131 473.0 798 42.5
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 5.4e-130 470.3 776 40.2
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 5.6e-127 460.3 736 41.6
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.9e-106 392.1 685 42.0
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.3e-104 386.0 706 33.1
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 3.3e-95 354.8 343 54.2
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 7.4e-95 353.6 786 33.6
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 4.5e-92 344.4 685 37.1
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.9e-90 339.0 717 36.4
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.8e-86 325.1 915 30.4
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.2e-71 276.6 804 28.1
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 4.1e-69 268.1 624 30.8
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 7.0e-69 267.3 347 42.7
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 9.2e-45 187.2 287 39.7
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 6.2e-41 174.5 292 38.0
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 3.0e-35 155.6 596 28.5
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 4.7e-33 148.3 629 28.3
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 2.1e-25 122.9 255 28.6
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.1e-24 119.0 376 25.0
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.6e-23 115.9 209 36.4
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.3e-22 113.6 115 52.2
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 1.3e-22 113.6 569 29.2
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 5.6e-18 98.2 310 36.1
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 5.6e-18 98.2 310 36.1
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.2e-17 97.1 391 23.8
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.5e-15 90.1 211 32.2
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 9.9e-15 87.4 549 26.6
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 8.4e-14 84.3 275 29.8
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 9.3e-13 80.9 507 25.0
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.2e-12 80.5 567 23.6
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 1.7e-11 76.6 204 37.3
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 3.0e-11 75.9 181 32.0
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 8.7e-11 74.3 321 25.5
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 5.6e-10 71.6 136 31.6
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 7.3e-10 71.2 370 21.6
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 9.6e-10 70.9 573 25.1
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 2.8e-09 69.3 573 25.1
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 2.4e-08 66.2 492 26.2
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 2.4e-08 66.2 492 26.2
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 2.0e-07 63.2 570 24.7
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 4.5e-07 62.0 92 42.4
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 7.6e-07 61.2 93 38.7


User provided reference genes

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