Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 8.3e-199 696.8 345 100.0
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.4e-193 679.5 345 97.4
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.2e-193 677.6 345 97.1
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.2e-192 676.4 349 96.8
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 3.9e-188 661.4 345 95.1
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 4.7e-162 574.7 345 82.0
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.4e-161 572.4 345 78.0
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 4.0e-161 571.6 345 78.6
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 8.4e-159 563.9 345 79.7
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.6e-157 559.7 344 77.0
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.5e-155 553.1 345 75.9
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 2.1e-154 549.3 375 70.9
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 3.4e-152 542.0 343 75.2
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 7.6e-152 540.8 346 74.9
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 5.4e-150 534.6 347 75.2
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 9.3e-150 533.9 345 74.5
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.7e-149 532.3 345 73.3
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 4.6e-149 531.6 345 73.9
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 1.3e-148 530.0 345 73.6
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 1.1e-147 526.9 348 73.0
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 1.5e-147 526.6 347 73.8
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.9e-147 526.2 345 73.9
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 5.6e-147 524.6 354 70.9
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 7.4e-147 524.2 345 73.6
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 1.3e-146 523.5 349 72.8
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 1.3e-146 523.5 349 72.5
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 1.6e-146 523.1 359 70.5
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 2.1e-146 522.7 343 73.5
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 8.1e-146 520.8 345 72.8
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 1.4e-145 520.0 349 72.8
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.0e-145 518.5 374 69.3
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 5.3e-145 518.1 345 72.5
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.7e-143 513.1 347 72.9
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.9e-142 509.6 330 73.3
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.9e-142 509.6 345 71.3
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 9.3e-142 507.3 350 72.6
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 9.3e-142 507.3 347 69.7
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.6e-141 506.5 306 77.8
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 2.1e-141 506.1 348 71.6
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 2.7e-141 505.8 343 70.6
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 2.7e-141 505.8 344 69.2
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 6.0e-141 504.6 345 69.0
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 1.3e-140 503.4 345 71.3
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.3e-140 503.4 346 69.9
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 1.3e-140 503.4 346 69.1
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 3.0e-140 502.3 351 70.9
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 6.7e-140 501.1 345 70.1
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 3.3e-139 498.8 349 69.9
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 5.6e-139 498.0 349 69.6
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 5.6e-139 498.0 345 71.9
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 7.4e-139 497.7 286 84.3
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 1.3e-138 496.9 328 72.6
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.3e-138 496.9 361 64.8
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 1.6e-138 496.5 345 69.3
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 3.1e-137 492.3 340 72.6
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.2e-136 490.3 340 70.9
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.2e-136 490.3 346 70.5
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 2.0e-136 489.6 343 70.0
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.4e-136 488.8 340 70.9
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 5.8e-136 488.0 347 70.0
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 5.8e-136 488.0 347 70.0
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 5.8e-136 488.0 316 73.1
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 2.2e-135 486.1 346 69.9
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 2.2e-135 486.1 304 76.6
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 4.9e-135 485.0 346 69.9
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 6.5e-135 484.6 349 67.9
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 8.4e-135 484.2 345 69.9
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 8.4e-135 484.2 346 66.8
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 3.2e-134 482.3 347 68.0
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 3.2e-134 482.3 336 69.9
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.7e-133 479.2 348 67.8
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 2.3e-132 476.1 347 69.2
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 1.5e-131 473.4 380 62.4
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.7e-131 471.5 344 68.0
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.3e-130 470.3 305 73.8
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 5.9e-128 461.5 343 65.0
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 1.7e-127 459.9 346 65.6
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 2.9e-127 459.1 299 75.3
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 3.8e-127 458.8 351 65.8
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 9.3e-126 454.1 330 68.5
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 2.1e-125 453.0 350 64.6
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 2.7e-125 452.6 327 67.0
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 8.7e-124 447.6 330 67.6
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 1.5e-123 446.8 336 65.2
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.9e-123 446.4 343 65.0
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.5e-123 446.0 342 62.0
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 5.7e-123 444.9 309 68.9
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 7.4e-123 444.5 331 66.2
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 9.7e-123 444.1 331 67.4
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 9.7e-123 444.1 332 66.6
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.3e-122 443.7 332 66.9
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 2.8e-122 442.6 330 66.4
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 2.8e-122 442.6 310 69.7
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 1.1e-121 440.7 361 60.1
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 5.3e-121 438.3 279 74.6
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.5e-120 436.8 286 72.7
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.3e-119 433.7 285 73.3
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 1.1e-118 430.6 319 64.3
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.4e-118 430.3 279 73.5
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 1.9e-118 429.9 306 68.3
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 9.4e-118 427.6 344 62.5
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.1e-117 426.4 343 62.7
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 6.1e-117 424.9 330 63.3
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 7.9e-117 424.5 283 73.1
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 7.9e-117 424.5 349 61.9
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.0e-116 422.5 311 62.7
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 5.1e-116 421.8 315 65.1
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 8.8e-116 421.0 330 63.0
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 8.8e-116 421.0 330 63.0
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 3.3e-115 419.1 314 64.6
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.7e-115 418.3 311 63.0
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 1.3e-114 417.2 327 63.3
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 2.8e-114 416.0 342 61.4
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 1.1e-113 414.1 314 64.0
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 4.2e-110 402.1 323 60.1
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 7.2e-110 401.4 341 61.3
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 6.7e-108 394.8 333 62.2
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 2.6e-107 392.9 261 70.9
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 3.7e-106 389.0 330 61.8
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.1e-105 387.5 282 63.8
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 5.9e-104 381.7 385 54.3
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 1.7e-103 380.2 360 57.5
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 2.2e-103 379.8 344 58.4
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 2.5e-102 376.3 360 56.9
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 4.7e-101 372.1 362 55.0
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.8e-100 370.2 251 71.7
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 7.5e-99 364.8 311 55.0
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 7.5e-99 364.8 303 56.4
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.6e-96 357.1 346 55.8
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 3.5e-96 355.9 325 56.0
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 5.5e-94 348.6 303 55.4
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 7.5e-91 338.2 309 53.1
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 8.3e-90 334.7 164 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 5.9e-88 328.6 309 52.1
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 1.6e-85 320.5 235 63.4
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 2.6e-83 313.2 335 46.3
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.4e-83 312.4 229 67.7
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.4e-81 307.4 281 55.2
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.1e-81 306.2 233 64.4
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.1e-78 297.7 318 55.0
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.3e-74 284.3 212 66.0
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.6e-59 233.4 165 65.5
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.6e-59 233.4 165 65.5
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 6.4e-58 228.8 140 80.0
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.6e-47 192.2 112 79.5
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 5.2e-44 182.6 357 33.1
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 9.9e-43 178.3 112 78.6
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.3e-42 177.9 194 50.0
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 2.1e-40 170.6 308 34.7
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 3.2e-33 146.7 330 30.9
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.0e-32 142.5 129 55.0
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.0e-32 142.5 163 49.1
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 9.6e-30 135.2 361 32.7
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 3.0e-23 113.6 87 65.5
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 9.6e-22 108.6 169 37.3
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 2.1e-21 107.5 117 55.6
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.4e-17 94.7 286 28.0
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 2.1e-16 90.9 105 44.8


User provided reference genes

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