Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 4.4e-52 207.6 100 100.0
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 6.9e-29 130.6 89 76.4
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 6.9e-29 130.6 89 76.4
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.0e-28 129.0 89 75.3
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.5e-25 118.2 89 69.7
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.6e-17 92.8 90 57.8
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.6e-17 92.8 90 57.8
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.5e-17 91.7 65 66.2
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 6.0e-17 90.9 65 66.2
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 6.0e-17 90.9 77 55.8
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 7.9e-17 90.5 77 57.1
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 7.9e-17 90.5 77 58.4
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 7.9e-17 90.5 77 62.3
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.0e-16 90.1 62 72.6
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.0e-16 90.1 77 57.1
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.0e-16 90.1 77 57.1
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.3e-16 89.7 64 65.6
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.3e-16 89.7 64 65.6
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.3e-16 89.7 62 69.4
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.0e-16 88.6 77 57.1
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.0e-16 88.6 77 57.1
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 3.9e-16 88.2 95 49.5
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 5.1e-16 87.8 77 53.2
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 6.7e-16 87.4 77 57.1
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 8.7e-16 87.0 77 58.4
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 8.7e-16 87.0 77 55.8
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.9e-15 85.9 77 55.8
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.9e-15 85.9 77 57.1
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.9e-15 85.9 64 65.6
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.9e-15 85.9 90 52.2
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 2.5e-15 85.5 64 60.9
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.5e-15 85.5 90 52.2
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 3.3e-15 85.1 62 66.1
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 3.3e-15 85.1 77 54.5
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.3e-15 84.7 65 60.0
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 4.3e-15 84.7 90 53.3
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 5.6e-15 84.3 62 67.7
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 7.4e-15 84.0 65 58.5
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 7.4e-15 84.0 62 71.0
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.4e-15 84.0 77 54.5
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 9.6e-15 83.6 77 53.2
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-14 82.8 77 54.5
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 1.6e-14 82.8 65 58.5
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 1.6e-14 82.8 65 58.5
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 2.1e-14 82.4 77 54.5
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.1e-14 82.4 78 52.6
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 2.1e-14 82.4 77 54.5
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 2.1e-14 82.4 77 57.1
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 3.7e-14 81.6 62 62.9
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 3.7e-14 81.6 77 54.5
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 3.7e-14 81.6 77 54.5
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 3.7e-14 81.6 62 66.1
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 4.8e-14 81.3 77 50.6
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 6.2e-14 80.9 95 48.4
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 8.1e-14 80.5 65 56.9
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 8.1e-14 80.5 77 48.1
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-13 80.1 77 51.9
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-13 80.1 77 51.9
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.1e-13 80.1 96 44.8
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.1e-13 80.1 67 58.2
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.4e-13 79.7 77 51.9
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.4e-13 79.7 77 51.9
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.4e-13 79.7 77 51.9
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.4e-13 79.7 96 44.8
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.8e-13 79.3 77 51.9
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.8e-13 79.3 65 58.5
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.8e-13 79.3 65 58.5
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.4e-13 79.0 65 61.5
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 2.4e-13 79.0 71 50.7
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 2.4e-13 79.0 65 58.5
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 3.1e-13 78.6 64 54.7
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 4.0e-13 78.2 77 54.5
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 5.3e-13 77.8 65 56.9
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 6.9e-13 77.4 77 50.6
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 6.9e-13 77.4 62 64.5
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 9.0e-13 77.0 78 51.3
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.2e-12 76.6 62 58.1
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 3.4e-12 75.1 76 50.0
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 4.5e-12 74.7 62 58.1
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 4.5e-12 74.7 62 58.1
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 4.5e-12 74.7 65 56.9
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 5.8e-12 74.3 62 56.5
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.7e-11 72.8 90 45.6
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 2.2e-11 72.4 90 47.8
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 2.2e-11 72.4 64 53.1
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.9e-11 72.0 97 41.2
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.8e-11 71.6 62 54.8
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 4.9e-11 71.2 65 53.8
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 4.9e-11 71.2 76 48.7
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 8.4e-11 70.5 83 47.0
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.1e-10 70.1 65 49.2
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.4e-10 69.7 90 45.6
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.9e-10 69.3 77 41.6
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.5e-10 68.9 77 46.8
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.5e-10 68.9 77 46.8
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 2.5e-10 68.9 65 49.2
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 3.2e-10 68.6 77 45.5
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.2e-10 68.6 77 41.6
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 4.2e-10 68.2 90 44.4
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 7.1e-10 67.4 65 49.2
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 7.1e-10 67.4 65 49.2
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.1e-10 67.4 71 46.5
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.6e-09 66.2 65 50.8
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.6e-09 66.2 65 50.8
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.7e-09 65.5 78 41.0
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.7e-09 65.5 65 50.8
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 7.9e-09 63.9 65 47.7
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 7.9e-09 63.9 65 47.7
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 7.9e-09 63.9 65 47.7
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 7.9e-09 63.9 65 47.7
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 7.9e-09 63.9 65 47.7
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 7.9e-09 63.9 65 47.7
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.0e-08 63.5 62 54.8
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.0e-08 63.5 62 50.0
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.0e-08 63.5 62 50.0
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 2.3e-08 62.4 68 51.5
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 3.0e-08 62.0 61 47.5
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 5.1e-08 61.2 65 47.7
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 5.1e-08 61.2 53 56.6
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 6.7e-08 60.8 51 56.9
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.5e-07 59.7 65 47.7


User provided reference genes

Program Settings