Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 7.2e-121 437.2 210 100.0
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.8e-117 425.2 210 98.1
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 2.4e-116 422.2 210 96.2
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 9.4e-113 410.2 252 81.7
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.2e-112 409.8 252 81.3
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.6e-112 408.3 231 87.0
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 1.3e-101 373.2 211 88.2
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 3.9e-90 335.1 214 76.2
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 1.2e-86 323.6 187 79.1
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 5.8e-86 321.2 185 79.5
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.3e-85 320.1 184 78.3
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.3e-85 320.1 185 78.9
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 5.4e-84 314.7 208 73.1
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 9.2e-84 313.9 185 78.4
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.0e-83 312.8 183 78.7
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 4.6e-83 311.6 185 76.8
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.0e-82 310.5 183 77.0
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.3e-82 310.1 189 74.6
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.7e-82 309.7 183 76.5
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 1.7e-82 309.7 183 77.0
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 8.6e-82 307.4 182 76.4
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.1e-81 307.0 183 75.4
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.1e-81 307.0 183 75.4
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.5e-81 306.6 181 76.2
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.5e-81 305.8 182 77.5
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 3.3e-81 305.4 182 77.5
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 3.3e-81 305.4 178 78.7
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 3.3e-81 305.4 185 74.1
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 5.6e-81 304.7 181 76.8
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 7.3e-81 304.3 182 76.9
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 7.3e-81 304.3 178 78.7
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 7.3e-81 304.3 185 74.1
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 7.3e-81 304.3 182 76.4
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 9.5e-81 303.9 185 74.1
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 1.2e-80 303.5 185 74.1
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.6e-80 303.1 177 76.8
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 1.6e-80 303.1 180 75.6
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.1e-80 302.8 182 74.7
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.1e-80 302.8 178 78.1
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.1e-80 302.8 178 78.1
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 2.8e-80 302.4 183 73.2
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 3.6e-80 302.0 182 75.8
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 3.6e-80 302.0 182 75.3
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 4.7e-80 301.6 177 76.8
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 6.2e-80 301.2 200 70.0
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 1.4e-79 300.1 187 73.8
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 1.8e-79 299.7 182 75.3
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.8e-79 299.7 183 73.2
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.8e-79 299.7 185 74.1
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.8e-79 299.7 185 74.1
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-79 299.3 183 73.8
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 2.3e-79 299.3 182 74.7
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 3.1e-79 298.9 185 74.6
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 3.1e-79 298.9 184 73.9
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.0e-79 298.5 185 73.0
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 4.0e-79 298.5 182 74.2
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 6.8e-79 297.7 176 76.7
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.5e-78 296.6 185 73.0
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.6e-78 295.8 176 73.9
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 2.6e-78 295.8 196 69.9
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.6e-78 295.8 185 72.4
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.6e-78 295.8 185 72.4
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 4.4e-78 295.0 181 73.5
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 4.4e-78 295.0 188 72.3
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 4.4e-78 295.0 185 71.9
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 5.8e-78 294.7 183 71.6
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 5.8e-78 294.7 187 68.4
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 7.5e-78 294.3 183 73.2
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 1.3e-77 293.5 179 72.6
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.7e-77 293.1 188 71.8
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 2.2e-77 292.7 185 70.3
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 2.2e-77 292.7 185 70.3
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 2.9e-77 292.4 181 74.0
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 2.9e-77 292.4 185 71.9
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 2.9e-77 292.4 179 71.5
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 4.9e-77 291.6 185 69.7
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 4.9e-77 291.6 178 73.0
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.4e-77 291.2 185 71.4
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 6.4e-77 291.2 175 73.7
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 1.1e-76 290.4 182 70.3
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 3.2e-76 288.9 179 72.1
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 3.2e-76 288.9 183 72.1
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 4.1e-76 288.5 175 71.4
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 4.1e-76 288.5 175 72.6
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 7.1e-76 287.7 179 71.5
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 2.1e-75 286.2 175 73.1
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 4.6e-75 285.0 197 66.0
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 7.8e-75 284.3 189 68.3
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.7e-74 283.1 199 65.8
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 2.3e-74 282.7 225 59.6
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 3.9e-74 282.0 178 67.4
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 1.5e-73 280.0 182 69.2
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 4.7e-72 275.0 168 71.4
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 4.9e-69 265.0 154 75.3
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.4e-69 264.6 164 73.2
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 6.4e-69 264.6 189 65.6
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.1e-68 263.8 153 75.8
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 9.2e-68 260.8 154 76.0
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.6e-67 260.0 176 66.5
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.5e-67 258.8 184 62.5
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.0e-66 257.3 151 76.2
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.3e-66 256.9 163 72.4
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 8.6e-66 254.2 180 62.8
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.9e-65 253.1 151 72.8
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.6e-64 250.0 175 64.0
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.6e-64 250.0 175 64.0
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 2.1e-64 249.6 181 66.9
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 4.7e-64 248.4 155 73.5
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 6.2e-64 248.1 181 60.8
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 1.4e-63 246.9 181 68.0
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 2.4e-63 246.1 149 71.1
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 5.2e-63 245.0 162 70.4
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 2.9e-61 239.2 186 60.8
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 3.2e-60 235.7 148 70.9
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 4.2e-60 235.3 209 53.6
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.2e-60 235.3 146 71.2
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.2e-59 233.8 307 44.0
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.5e-57 226.9 141 71.6
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 3.3e-57 225.7 176 60.8
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 4.6e-51 205.3 176 57.4
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 1.0e-50 204.1 194 53.6
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 1.3e-50 203.8 182 52.7
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 3.9e-50 202.2 179 50.8
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.3e-49 198.0 120 74.2
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 9.6e-49 197.6 177 53.1
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 8.4e-45 184.5 208 46.6
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.9e-41 173.3 198 45.5
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 7.4e-41 171.4 91 80.2
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.3e-40 170.6 172 44.2
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.3e-40 170.6 172 44.2
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.8e-37 159.1 90 75.6
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 4.9e-37 158.7 120 59.2
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 4.6e-35 152.1 203 38.4
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.0e-34 151.0 143 52.4
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.3e-34 150.6 184 46.2
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 6.7e-34 148.3 178 38.2
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 2.5e-33 146.4 178 42.1
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 4.3e-33 145.6 161 46.6
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.6e-32 143.7 180 37.8
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-31 140.2 149 49.7
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.9e-28 130.2 92 62.0
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 4.8e-24 115.5 90 58.9
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.0e-10 71.2 46 63.0
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 2.6e-09 66.6 69 46.4
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 9.1e-07 58.2 43 60.5


User provided reference genes

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