Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 8.7e-255 883.2 484 100.0
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.8e-250 867.8 484 98.6
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.1e-248 862.1 484 97.9
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 9.4e-233 810.1 485 94.6
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.1e-232 807.4 485 94.4
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.7e-197 693.0 490 83.1
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.5e-140 503.1 495 64.2
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 7.2e-140 501.5 488 65.2
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 8.2e-136 488.0 494 63.4
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 8.2e-136 488.0 436 65.6
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 2.0e-134 483.4 495 64.0
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 5.1e-130 468.8 494 58.9
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 1.1e-129 467.6 501 61.7
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.8e-128 463.0 499 59.9
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 7.0e-127 458.4 499 59.7
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 9.1e-127 458.0 492 60.0
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 8.0e-123 444.9 491 59.3
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 3.9e-122 442.6 487 58.1
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 8.8e-122 441.4 502 59.4
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 3.3e-121 439.5 493 58.8
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 4.1e-119 432.6 491 56.2
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 7.2e-116 421.8 484 58.9
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.6e-115 420.6 478 57.5
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.2e-113 414.5 489 58.3
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 1.5e-113 414.1 500 55.0
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.5e-113 414.1 491 55.4
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 4.4e-113 412.5 491 56.6
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 3.7e-112 409.5 478 55.9
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 4.8e-112 409.1 494 55.5
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 8.2e-112 408.3 488 57.6
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.1e-111 406.0 494 55.3
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 5.3e-111 405.6 491 54.8
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 5.3e-111 405.6 488 55.9
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 7.0e-111 405.2 496 55.8
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.0e-110 403.7 465 56.6
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 4.5e-110 402.5 487 53.6
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 4.5e-110 402.5 496 56.2
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.0e-109 401.4 493 55.8
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 2.2e-109 400.2 502 54.6
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 5.0e-109 399.1 482 55.0
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 9.4e-108 394.8 471 57.3
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 2.1e-107 393.7 502 54.4
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.7e-107 393.3 467 56.3
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.0e-106 389.4 467 55.9
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 6.8e-106 388.7 467 55.9
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.2e-105 387.9 494 53.2
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 2.0e-105 387.1 494 53.6
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 4.4e-105 386.0 511 53.0
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 5.7e-105 385.6 422 60.0
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.8e-104 383.3 499 53.3
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 3.7e-104 382.9 483 53.6
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.1e-103 381.3 527 50.5
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-103 381.3 494 53.0
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.8e-103 380.6 491 53.8
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 4.1e-103 379.4 493 53.8
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 2.0e-102 377.1 505 52.3
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 2.7e-102 376.7 496 52.4
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 2.7e-102 376.7 482 53.5
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 7.7e-102 375.2 488 53.7
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.9e-100 370.5 498 50.6
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 3.3e-100 369.8 497 53.3
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 3.3e-100 369.8 473 54.1
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.6e-99 367.5 489 53.4
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.6e-99 367.5 490 50.4
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.6e-99 367.5 493 51.5
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.8e-98 364.0 598 46.3
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 6.8e-98 362.1 506 53.0
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 6.8e-98 362.1 486 51.9
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 2.0e-97 360.5 490 53.1
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 5.7e-97 359.0 485 50.5
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.3e-96 357.8 529 49.3
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 4.9e-96 355.9 522 50.6
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 6.3e-96 355.5 477 52.6
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 8.3e-96 355.1 491 52.1
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.4e-95 354.4 493 51.1
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.4e-95 354.4 388 55.9
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.4e-95 353.6 477 52.4
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.6e-94 350.9 502 48.8
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.0e-94 350.5 500 52.0
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 1.3e-93 347.8 493 50.9
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.5e-92 343.6 512 49.6
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.5e-92 343.6 466 50.6
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 4.3e-92 342.8 498 48.6
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 5.6e-92 342.4 534 45.9
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 2.1e-91 340.5 444 52.3
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 4.7e-91 339.3 509 50.5
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 4.7e-91 339.3 463 51.2
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.5e-89 334.3 486 49.6
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.1e-87 328.2 501 49.5
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.1e-87 328.2 486 50.0
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 3.2e-87 326.6 504 46.4
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 4.1e-87 326.2 518 49.4
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 7.0e-87 325.5 368 57.6
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 7.0e-87 325.5 488 48.4
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.7e-86 323.6 487 49.5
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.6e-86 322.8 490 47.8
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 3.0e-85 320.1 453 47.9
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.1e-84 318.2 503 47.5
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 3.3e-84 316.6 471 48.2
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.1e-83 313.9 488 47.7
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 4.7e-83 312.8 525 46.3
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 5.2e-82 309.3 439 49.7
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.1e-79 299.7 348 56.3
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 7.0e-79 298.9 567 40.7
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 9.2e-79 298.5 473 46.5
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.2e-78 298.1 491 47.5
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 1.0e-77 295.0 249 70.3
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.7e-77 294.3 469 46.7
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 2.8e-75 287.0 483 46.2
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 4.7e-75 286.2 488 46.7
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.9e-72 276.2 492 45.3
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 3.5e-70 270.0 491 44.2
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.9e-68 264.2 493 44.4
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 5.6e-68 262.7 427 47.3
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.1e-66 258.5 475 42.5
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 3.1e-66 256.9 488 44.1
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.2e-63 246.5 491 40.5
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 4.2e-63 246.5 293 56.3
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 2.1e-62 244.2 421 47.0
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 2.1e-59 234.2 453 42.4
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 6.9e-58 229.2 269 56.9
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 4.4e-57 226.5 477 41.5
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 1.3e-56 224.9 285 56.8
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.3e-56 224.9 411 42.6
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 3.2e-55 220.3 296 51.0
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 2.1e-54 217.6 426 39.9
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.3e-53 214.2 442 41.0
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.3e-40 171.8 458 34.9
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 2.0e-33 147.9 411 33.8
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 6.1e-30 136.3 197 48.7
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 9.0e-26 122.5 113 55.8
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.5e-25 121.7 275 40.4
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.0e-24 119.0 447 29.3
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.7e-24 118.2 162 51.2
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 1.9e-23 114.8 174 40.2
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.2e-23 113.6 67 79.1
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 7.2e-23 112.8 75 73.3
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.7e-19 101.7 460 27.6
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.8e-18 98.2 265 32.5
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.7e-16 91.7 260 34.6
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 1.9e-15 88.2 172 46.5
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.9e-15 88.2 321 30.5
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.7e-14 83.6 144 38.2
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 7.9e-14 82.8 78 59.0
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 1.4e-13 82.0 195 41.0
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 5.1e-13 80.1 402 25.9
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 5.7e-12 76.6 155 43.2
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 4.8e-11 73.6 190 38.9
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.6e-09 67.8 83 55.4
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 5.9e-09 66.6 70 48.6
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 6.5e-08 63.2 184 37.0
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 1.5e-07 62.0 196 35.7
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 9.4e-07 59.3 191 35.6
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 1.2e-06 58.9 73 53.4
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 3.6e-06 57.4 99 48.5


User provided reference genes

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