Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.6e-288 994.2 498 100.0
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.8e-278 960.3 500 96.6
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.9e-278 959.5 500 96.4
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.2e-277 958.4 500 96.4
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.1e-274 947.2 511 93.5
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 4.3e-273 944.1 507 94.3
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 7.9e-251 870.2 520 85.6
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.9e-204 716.1 538 72.1
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.7e-200 703.0 532 71.2
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 3.1e-199 698.7 529 70.5
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 2.3e-194 682.6 537 70.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.6e-193 679.1 491 73.7
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 4.4e-193 678.3 527 70.6
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 7.5e-193 677.6 524 69.3
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 4.9e-192 674.9 536 69.0
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 8.3e-192 674.1 504 70.6
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 1.4e-191 673.3 509 70.1
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.0e-189 667.2 497 72.0
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 2.9e-189 665.6 508 69.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 6.6e-189 664.5 507 70.0
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 1.1e-188 663.7 504 70.0
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 7.3e-188 661.0 507 69.4
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 9.5e-188 660.6 518 67.8
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.2e-187 660.2 513 69.4
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.6e-187 659.8 509 69.4
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 6.2e-187 657.9 525 67.2
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.8e-186 656.4 507 68.8
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.3e-186 656.0 519 67.6
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 3.1e-186 655.6 557 65.7
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 8.9e-186 654.1 484 71.1
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 8.9e-186 654.1 443 75.2
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 3.4e-185 652.1 478 69.5
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 3.4e-185 652.1 513 69.4
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 9.8e-185 650.6 534 65.9
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.3e-184 650.2 533 64.0
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.3e-184 650.2 494 70.0
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 3.7e-184 648.7 422 75.8
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 6.4e-184 647.9 510 68.2
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.1e-183 647.1 511 67.7
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 2.4e-183 646.0 446 72.9
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 7.0e-183 644.4 421 77.2
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 6.0e-182 641.3 498 67.7
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 6.0e-182 641.3 520 66.2
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 1.0e-181 640.6 519 66.5
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.0e-181 640.6 472 71.2
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.0e-181 640.6 521 65.6
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 3.3e-180 635.6 515 65.2
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 4.3e-180 635.2 508 66.7
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 9.5e-180 634.0 502 66.3
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.6e-179 633.3 488 68.9
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.2e-179 631.3 513 64.7
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 8.1e-179 630.9 499 66.9
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.4e-178 630.2 471 70.3
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.8e-178 629.8 493 68.2
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.8e-178 629.8 499 66.9
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 4.0e-178 628.6 479 67.4
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 4.0e-178 628.6 480 69.8
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 5.2e-178 628.2 510 67.1
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.2e-177 627.1 469 70.6
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.5e-177 626.7 464 69.0
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 3.4e-177 625.5 510 65.9
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 7.5e-177 624.4 515 65.6
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 7.5e-177 624.4 422 74.9
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 7.5e-177 624.4 476 69.7
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 7.5e-177 624.4 515 65.6
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 7.5e-177 624.4 476 69.7
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 7.5e-177 624.4 503 66.8
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 9.8e-177 624.0 514 66.0
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 9.8e-177 624.0 499 66.7
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 9.8e-177 624.0 499 66.7
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.3e-176 623.6 462 70.1
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.7e-176 623.2 509 65.8
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.7e-176 623.2 509 65.8
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.7e-176 623.2 432 72.5
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 2.2e-176 622.9 476 69.5
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 2.2e-176 622.9 488 67.8
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.2e-176 622.9 520 65.4
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.9e-176 622.5 509 65.8
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.9e-175 619.8 485 66.6
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.9e-175 619.8 395 78.0
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-175 619.8 447 71.6
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 2.4e-175 619.4 514 65.6
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 2.4e-175 619.4 514 64.8
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.2e-175 619.0 520 64.6
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.6e-174 616.7 454 70.3
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 1.6e-174 616.7 483 66.3
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 2.7e-174 615.9 519 64.2
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.7e-174 615.9 424 73.1
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.7e-174 615.9 468 68.6
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 6.0e-174 614.8 515 64.3
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.0e-173 614.0 430 71.9
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 2.3e-173 612.8 516 65.1
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 3.9e-173 612.1 520 63.7
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.5e-172 610.1 474 65.8
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.5e-172 609.4 492 63.6
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 4.3e-172 608.6 508 64.0
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.6e-171 606.7 422 71.8
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 2.8e-171 605.9 477 65.0
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 3.6e-171 605.5 505 64.0
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 3.6e-171 605.5 487 63.9
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 9.9e-169 597.4 558 59.5
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.3e-168 597.0 466 69.3
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.2e-168 596.3 517 63.4
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 2.9e-168 595.9 462 69.0
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 4.9e-168 595.1 441 67.8
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.1e-166 589.7 420 69.3
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.5e-164 583.6 431 70.1
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 3.3e-164 582.4 574 58.0
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 7.3e-164 581.3 513 62.6
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.8e-158 561.2 487 62.8
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.0e-157 560.8 412 67.7
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 4.3e-156 555.4 513 56.9
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 8.1e-155 551.2 509 60.1
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.1e-151 540.8 418 64.6
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 2.1e-150 536.6 523 53.7
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.7e-150 536.2 501 56.3
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 3.9e-149 532.3 507 59.2
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 5.1e-149 531.9 477 56.4
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.1e-148 530.8 372 68.3
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 4.3e-148 528.9 620 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 5.6e-148 528.5 494 56.5
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 5.6e-148 528.5 451 58.8
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 2.1e-147 526.6 453 64.5
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 2.8e-147 526.2 511 56.6
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 7.6e-145 518.1 455 63.5
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.9e-145 517.7 420 64.8
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.1e-143 514.2 482 58.3
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.2e-143 512.3 391 68.5
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 5.5e-143 511.9 506 58.1
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 1.8e-141 506.9 355 72.1
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 3.3e-140 502.7 435 63.7
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 7.6e-137 491.5 461 60.3
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 7.9e-134 481.5 405 67.2
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 6.7e-133 478.4 518 55.2
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 8.7e-133 478.0 442 60.4
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.4e-130 469.9 372 65.1
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 5.9e-129 465.3 412 62.1
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 3.8e-128 462.6 439 57.9
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 1.4e-127 460.7 347 68.6
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.9e-127 460.3 410 60.5
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 7.2e-127 458.4 387 64.1
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.6e-126 457.2 493 51.9
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.4e-124 448.4 360 65.0
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.7e-118 429.9 384 60.9
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 3.8e-112 409.5 380 62.1
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.4e-109 401.0 368 57.3
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 3.3e-108 396.4 363 60.6
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.7e-102 376.7 442 52.5
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.1e-100 371.3 290 66.9
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 6.5e-88 328.9 210 75.7
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.2e-87 326.6 435 43.7
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 5.8e-68 262.7 288 56.2
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 9.2e-66 255.4 272 54.4
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 2.3e-64 250.8 145 81.4
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.8e-62 243.8 320 50.6
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.0e-60 237.7 193 58.5
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 4.4e-60 236.5 269 56.9
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.4e-58 230.7 155 72.9
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 5.8e-52 209.5 160 60.6
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.2e-49 201.8 407 34.2
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 5.6e-47 193.0 504 31.5
FAN23G1809 Fragaria x ananassa HOM05D030250 ORTHO05D004552 3.4e-44 183.7 108 92.6
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 3.8e-43 180.3 205 58.0
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.4e-42 178.3 103 77.7
FAN20G2717 Fragaria x ananassa HOM05D030250 ORTHO05D004552 2.0e-28 131.3 113 69.9
FAN23G0554 Fragaria x ananassa HOM05D030250 ORTHO05D004552 5.8e-28 129.8 113 69.0
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 4.2e-18 97.1 51 86.3
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 6.0e-17 93.2 186 32.3
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.0e-16 92.4 51 80.4
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 3.9e-16 90.5 49 83.7
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.1e-13 82.4 232 28.4
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 9.0e-13 79.3 126 46.0
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.2e-10 69.7 39 82.1
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 7.2e-10 69.7 106 40.6
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 7.2e-10 69.7 63 49.2
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 6.3e-06 56.6 43 62.8


User provided reference genes

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