Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.2e-188 662.1 331 100.0
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.1e-147 526.9 266 100.0
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.3e-119 433.7 220 99.1
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.6e-117 426.0 222 96.8
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.5e-114 415.6 219 96.3
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.5e-114 415.6 219 96.3
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.8e-111 406.0 220 93.2
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.1e-110 404.1 221 91.9
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 5.1e-105 385.2 221 86.9
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.4e-78 297.4 235 65.1
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 9.4e-75 284.6 235 63.0
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 3.6e-74 282.7 212 67.9
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 9.1e-70 268.1 235 61.7
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.0e-65 254.6 230 60.0
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 6.8e-65 251.9 236 57.2
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 2.6e-64 250.0 236 55.5
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 7.5e-64 248.4 228 55.3
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 1.1e-62 244.6 230 56.5
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.1e-62 244.6 236 55.1
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.1e-62 243.0 136 91.2
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 9.1e-62 241.5 237 56.5
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.2e-61 241.1 242 55.4
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.6e-61 240.7 225 57.8
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.6e-61 240.7 235 55.3
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.7e-61 240.0 236 54.7
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 3.5e-61 239.6 262 51.1
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 4.5e-61 239.2 236 55.5
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 5.9e-61 238.8 236 54.7
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.9e-60 236.5 210 58.1
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 3.8e-60 236.1 232 57.3
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 8.5e-60 235.0 237 54.4
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.5e-59 234.2 237 56.5
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.5e-59 232.3 224 53.6
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.7e-58 229.9 232 55.2
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 8.0e-58 228.4 236 53.4
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.8e-57 227.3 232 56.0
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.2e-56 224.6 225 52.4
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.2e-56 224.6 224 51.8
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 2.6e-56 223.4 231 51.5
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.6e-56 223.4 241 50.2
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 5.7e-56 222.2 252 49.6
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.7e-55 220.7 222 53.6
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.7e-55 220.7 226 52.2
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.7e-55 219.5 226 51.8
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.1e-54 218.0 231 56.3
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 2.4e-54 216.9 212 54.2
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 2.4e-54 216.9 206 53.4
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 1.6e-53 214.2 226 51.3
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 3.5e-53 213.0 231 55.0
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 4.5e-53 212.6 232 50.4
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.9e-53 212.2 176 60.2
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 7.7e-53 211.8 222 53.2
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 7.7e-53 211.8 237 49.4
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 1.0e-52 211.5 222 54.1
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.0e-52 211.5 226 51.3
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.7e-52 210.7 235 49.8
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 2.3e-52 210.3 225 51.1
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 3.8e-52 209.5 236 49.6
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 1.1e-51 208.0 223 52.9
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.5e-51 207.6 234 49.6
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.9e-51 207.2 235 51.1
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 5.6e-51 205.7 232 48.3
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 5.6e-51 205.7 226 52.7
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.6e-50 204.1 228 49.6
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 2.8e-50 203.4 224 49.1
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.6e-50 203.0 210 49.5
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.7e-50 202.6 238 49.6
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.0e-49 201.4 237 48.9
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.8e-49 200.7 230 49.6
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.8e-49 200.7 285 43.5
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.0e-49 199.5 196 51.5
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.9e-49 198.4 245 47.3
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 2.6e-48 196.8 215 50.2
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 2.6e-48 196.8 207 50.2
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 2.6e-48 196.8 230 48.7
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 7.5e-48 195.3 215 49.8
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 9.8e-48 194.9 217 49.3
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-47 194.1 220 49.5
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.7e-47 193.0 252 46.0
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 1.6e-45 187.6 194 57.7
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.7e-45 186.8 191 53.4
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 4.6e-45 186.0 231 48.5
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 4.6e-45 186.0 224 48.2
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 2.3e-44 183.7 239 43.9
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.0e-44 183.3 233 46.4
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 8.6e-44 181.8 219 46.6
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 8.6e-44 181.8 262 44.3
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 3.3e-43 179.9 232 47.0
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.3e-43 179.5 226 46.0
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-42 177.2 221 46.2
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-42 176.4 221 45.7
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 3.6e-42 176.4 224 46.4
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 4.7e-42 176.0 233 42.5
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 6.2e-42 175.6 223 46.6
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.4e-41 174.5 232 44.0
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 3.1e-41 173.3 231 43.7
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 8.9e-41 171.8 196 52.0
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 5.8e-40 169.1 231 41.6
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 7.5e-40 168.7 216 44.4
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 2.9e-39 166.8 220 42.3
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 6.4e-39 165.6 236 41.9
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 6.4e-39 165.6 230 42.6
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.1e-38 164.9 222 46.4
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 4.1e-38 162.9 225 44.4
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 7.0e-38 162.2 226 44.2
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.2e-37 161.4 236 45.8
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 4.6e-37 159.5 228 40.4
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 6.0e-37 159.1 224 44.2
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.8e-37 158.7 169 50.9
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.0e-36 158.3 229 43.2
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.0e-36 156.8 240 42.1
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 8.6e-36 155.2 213 46.0
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-35 154.8 193 47.2
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.5e-35 154.5 227 41.9
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.5e-35 154.5 174 50.6
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.9e-35 154.1 156 49.4
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-34 150.6 217 41.5
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 2.8e-34 150.2 183 51.4
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.7e-34 149.4 238 44.1
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 6.2e-34 149.1 198 43.9
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 8.1e-34 148.7 224 41.5
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 1.4e-33 147.9 221 42.1
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 4.0e-33 146.4 228 42.1
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 2.6e-32 143.7 121 60.3
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.6e-32 143.7 228 40.8
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 7.5e-32 142.1 241 39.4
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 1.7e-31 141.0 172 48.3
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.7e-31 141.0 224 39.7
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 4.1e-30 136.3 236 38.6
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 2.1e-29 134.0 198 42.9
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.5e-27 127.9 92 66.3
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.5e-27 127.1 95 71.6
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.1e-25 121.7 171 42.1
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.8e-25 120.9 236 37.7
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 2.3e-25 120.6 205 39.0
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-24 117.9 167 43.7
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 7.1e-22 109.0 154 42.9
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 9.2e-22 108.6 178 39.9
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 3.6e-18 96.7 192 33.9
FAN28G2224 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.4e-14 82.8 148 39.9
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.5e-13 80.1 128 39.8
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 6.0e-13 79.3 155 34.2
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 3.0e-12 77.0 218 33.0
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.1e-11 75.1 112 42.0
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 1.9e-11 74.3 147 33.3
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 7.3e-11 72.4 146 32.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-10 71.6 111 39.6
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 6.2e-10 69.3 87 43.7
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.1e-10 68.9 111 38.7
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 8.1e-10 68.9 60 58.3
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.4e-09 68.2 50 74.0
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.1e-09 67.0 39 84.6
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 7.6e-08 62.4 83 43.4
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 7.6e-08 62.4 83 43.4
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.9e-08 62.0 92 40.2
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-07 61.6 98 43.9
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 2.2e-07 60.8 92 40.2
BraA01t00060Z Brassica rapa HOM05D004487 ORTHO05D032747 3.2e-06 57.0 113 33.6


User provided reference genes

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