Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.1e-37 159.5 77 100.0
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 5.5e-10 67.4 50 58.0
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 7.2e-10 67.0 55 52.7
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 9.4e-10 66.6 65 50.8
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 9.4e-10 66.6 54 51.9
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 1.6e-09 65.9 48 60.4
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.1e-09 65.5 66 47.0
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 2.7e-09 65.1 54 50.0
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 4.6e-09 64.3 50 54.0
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 4.6e-09 64.3 59 45.8
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 4.6e-09 64.3 54 53.7
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 6.1e-09 63.9 46 63.0
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 7.9e-09 63.5 51 52.9
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 7.9e-09 63.5 51 52.9
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 7.9e-09 63.5 63 46.0
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 1.0e-08 63.2 49 59.2
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 1.0e-08 63.2 59 50.8
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 1.4e-08 62.8 39 69.2
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 1.4e-08 62.8 53 50.9
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 1.4e-08 62.8 53 50.9
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 1.4e-08 62.8 63 46.0
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 1.4e-08 62.8 58 50.0
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 1.8e-08 62.4 52 50.0
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 1.8e-08 62.4 52 51.9
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 1.8e-08 62.4 59 50.8
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 1.8e-08 62.4 59 50.8
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 1.8e-08 62.4 59 50.8
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 1.8e-08 62.4 37 70.3
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 1.8e-08 62.4 51 56.9
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 1.8e-08 62.4 63 44.4
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.8e-08 62.4 56 48.2
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.8e-08 62.4 56 48.2
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 3.0e-08 61.6 46 58.7
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 3.0e-08 61.6 56 51.8
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 3.0e-08 61.6 59 49.2
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 3.9e-08 61.2 38 68.4
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 3.9e-08 61.2 38 68.4
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 3.9e-08 61.2 38 68.4
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 3.9e-08 61.2 46 60.9
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 5.1e-08 60.8 62 46.8
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 5.1e-08 60.8 50 54.0
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 5.1e-08 60.8 51 49.0
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 5.1e-08 60.8 46 60.9
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 6.7e-08 60.5 46 58.7
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 6.7e-08 60.5 51 49.0
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 6.7e-08 60.5 50 54.0
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 8.8e-08 60.1 38 65.8
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 8.8e-08 60.1 56 48.2
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 1.1e-07 59.7 59 45.8
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 1.1e-07 59.7 63 41.3
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 1.1e-07 59.7 46 54.3
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 1.1e-07 59.7 55 49.1
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 1.1e-07 59.7 62 45.2
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.1e-07 59.7 50 50.0
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 1.1e-07 59.7 52 48.1
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 1.1e-07 59.7 59 44.1
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.1e-07 59.7 43 60.5
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 1.1e-07 59.7 49 59.2
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 1.5e-07 59.3 46 58.7
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.5e-07 59.3 50 50.0
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 1.5e-07 59.3 64 42.2
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.5e-07 59.3 39 64.1
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.5e-07 59.3 39 64.1
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 2.0e-07 58.9 55 49.1
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 2.0e-07 58.9 43 60.5
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 2.6e-07 58.5 66 40.9
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.6e-07 58.5 55 47.3
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 3.3e-07 58.2 32 75.0
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 3.3e-07 58.2 59 44.1
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 3.3e-07 58.2 46 56.5
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 4.4e-07 57.8 56 46.4
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 4.4e-07 57.8 53 50.9
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 4.4e-07 57.8 62 45.2
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 4.4e-07 57.8 51 47.1
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 5.7e-07 57.4 50 56.0
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 5.7e-07 57.4 50 56.0
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 5.7e-07 57.4 59 42.4
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 5.7e-07 57.4 63 42.9
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 7.4e-07 57.0 51 51.0
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 7.4e-07 57.0 51 49.0
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 9.7e-07 56.6 51 49.0
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 9.7e-07 56.6 62 43.5
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 1.3e-06 56.2 48 52.1
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 1.7e-06 55.8 51 43.1
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 2.2e-06 55.5 54 46.3
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 2.2e-06 55.5 55 49.1
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 2.8e-06 55.1 47 57.4
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 2.8e-06 55.1 46 52.2
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 4.8e-06 54.3 50 48.0
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 6.3e-06 53.9 51 47.1
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 8.2e-06 53.5 43 53.5
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 8.2e-06 53.5 50 46.0


User provided reference genes

Program Settings