Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0290 Fragaria x ananassa HOM05D004849 ORTHO05D005955 6.0e-55 217.2 108 100.0
FAN28G0659 Fragaria x ananassa HOM05D004849 ORTHO05D005955 6.4e-49 197.2 108 92.6
FAN19G0755 Fragaria x ananassa HOM05D004849 ORTHO05D208034 2.3e-38 162.2 103 85.4
Actinidia23503 Actinidia chinensis HOM05D004849 ORTHO05D005955 1.1e-16 90.1 82 62.2
RcHm_v2.0_Chr4g0417521 Rosa chinensis HOM05D004849 ORTHO05D005955 3.2e-16 88.6 81 63.0
MD13G1185500 Malus domestica HOM05D004849 ORTHO05D005955 2.1e-15 85.9 81 61.7
Prupe.1G153200 Prunus persica HOM05D004849 ORTHO05D005955 2.7e-15 85.5 81 61.7
FvH4_4g14790 Fragaria vesca HOM05D004849 ORTHO05D005955 3.6e-15 85.1 81 60.5
FAN07G1248 Fragaria x ananassa HOM05D004849 ORTHO05D005955 3.6e-15 85.1 81 60.5
FAN12G0879 Fragaria x ananassa HOM05D004849 ORTHO05D005955 3.6e-15 85.1 81 60.5
FAN17G1787 Fragaria x ananassa HOM05D004849 ORTHO05D005955 3.6e-15 85.1 81 60.5
FAN22G1365 Fragaria x ananassa HOM05D004849 ORTHO05D005955 3.6e-15 85.1 81 60.5
CAN.G69.23 Capsicum annuum HOM05D004849 ORTHO05D005955 1.0e-14 83.6 81 61.7
CANSAT78G0899 Cannabis sativa HOM05D004849 ORTHO05D005955 1.8e-14 82.8 81 59.3
CSS0004513 Camellia sinensis var. sinensis HOM05D004849 ORTHO05D005955 2.3e-14 82.4 81 59.3
ATR0626G348 Amborella trichopoda HOM05D004849 ORTHO05D005955 5.2e-14 81.3 81 58.0
AT5G19180 Arabidopsis thaliana HOM05D004849 ORTHO05D005955 5.2e-14 81.3 82 54.9
Eucgr.H03572 Eucalyptus grandis HOM05D004849 ORTHO05D005955 5.2e-14 81.3 81 59.3
TAR362G1319 Trochodendron aralioides HOM05D004849 ORTHO05D005955 5.2e-14 81.3 81 59.3
FAN19G3009 Fragaria x ananassa HOM05D004849 ORTHO05D005955 6.7e-14 80.9 80 60.0
Hund12176 Selenicereus undatus HOM05D004849 ORTHO05D005955 6.7e-14 80.9 81 58.0
TPR.G37111 Trifolium pratense HOM05D004849 ORTHO05D005955 8.8e-14 80.5 81 58.0
EL10As3g23293 Beta vulgaris HOM05D004849 ORTHO05D005955 1.1e-13 80.1 81 58.0
PGR142G0613 Punica granatum HOM05D004849 ORTHO05D005955 1.1e-13 80.1 99 52.5
FvH4_1g25030 Fragaria vesca HOM05D004849 ORTHO05D005955 1.5e-13 79.7 81 59.3
FAN26G1719 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.5e-13 79.7 81 59.3
Carub.0006s1751 Capsella rubella HOM05D004849 ORTHO05D005955 2.0e-13 79.3 82 54.9
Glyma.07G258000 Glycine max HOM05D004849 ORTHO05D005955 2.0e-13 79.3 81 58.0
PSO170G1707 Papaver somniferum HOM05D004849 ORTHO05D005955 3.3e-13 78.6 81 56.8
PSO302G0110 Papaver somniferum HOM05D004849 ORTHO05D005955 3.3e-13 78.6 81 56.8
Sc13g0004120 Simmondsia chinensis HOM05D004849 ORTHO05D005955 3.3e-13 78.6 81 56.8
Thecc.04G224600 Theobroma cacao HOM05D004849 ORTHO05D005955 3.3e-13 78.6 81 56.8
AL6G30630 Arabidopsis lyrata HOM05D004849 ORTHO05D005955 4.4e-13 78.2 82 54.9
Gohir.A09G213680 Gossypium hirsutum HOM05D004849 ORTHO05D005955 4.4e-13 78.2 81 56.8
Gohir.D09G216000 Gossypium hirsutum HOM05D004849 ORTHO05D005955 4.4e-13 78.2 81 56.8
Gorai.006G236400 Gossypium raimondii HOM05D004849 ORTHO05D005955 4.4e-13 78.2 81 56.8
HanXRQChr16g0508681 Helianthus annuus HOM05D004849 ORTHO05D005955 4.4e-13 78.2 81 56.8
Lj4g0022520 Lotus japonicus HOM05D004849 ORTHO05D005955 4.4e-13 78.2 81 56.8
Nn1g02186 Nelumbo nucifera HOM05D004849 ORTHO05D005955 4.4e-13 78.2 81 56.8
Aqoxy2G03291 Aquilegia oxysepala HOM05D004849 ORTHO05D005955 5.7e-13 77.8 81 58.0
Ciclev10006509m.g Citrus clementina HOM05D004849 ORTHO05D005955 5.7e-13 77.8 81 55.6
Medtr4g131690 Medicago truncatula HOM05D004849 ORTHO05D005955 5.7e-13 77.8 81 58.0
Ah.04g154300 Amaranthus hybridus HOM05D004849 ORTHO05D005955 7.4e-13 77.4 81 55.6
CDE05G3222 Ceratophyllum demersum HOM05D004849 ORTHO05D005955 7.4e-13 77.4 81 55.6
CDE11G0641 Ceratophyllum demersum HOM05D004849 ORTHO05D005955 7.4e-13 77.4 81 55.6
ClCG05G005350 Citrullus lanatus HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 55.6
CsaV3_3G013600 Cucumis sativus L. HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 55.6
Dinv44492 Davidia involucrata HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 56.8
Hma1.2p1_0511F.1_g169010 Hydrangea macrophylla HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 56.8
Peaxi162Scf00134g02031 Petunia axillaris HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 58.0
Potri.008G204000 Populus trichocarpa HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 55.6
Sabra08G0157700 Salix brachista HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 55.6
Sed0011286 Sechium edule HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 55.6
Solyc01g079840.3 Solanum lycopersicum HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 58.0
Sopen01g031590 Solanum pennellii HOM05D004849 ORTHO05D005955 9.7e-13 77.0 81 58.0
Duzib212G0178 Durio zibethinus HOM05D004849 ORTHO05D005955 1.3e-12 76.6 81 54.3
Nitab4.5_0000630g0030 Nicotiana tabacum HOM05D004849 ORTHO05D005955 1.3e-12 76.6 81 58.0
Nitab4.5_0012513g0010 Nicotiana tabacum HOM05D004849 ORTHO05D005955 1.3e-12 76.6 81 58.0
BcaB08g36596 Brassica carinata HOM05D004849 ORTHO05D005955 1.7e-12 76.3 81 56.8
BcaC04g18590 Brassica carinata HOM05D004849 ORTHO05D005955 1.7e-12 76.3 81 56.8
A10p20450 Brassica napus HOM05D004849 ORTHO05D005955 1.7e-12 76.3 81 56.8
C09p57080 Brassica napus HOM05D004849 ORTHO05D005955 1.7e-12 76.3 81 56.8
BolC9t58573H Brassica oleracea HOM05D004849 ORTHO05D005955 1.7e-12 76.3 81 56.8
BraA10t44115Z Brassica rapa HOM05D004849 ORTHO05D005955 1.7e-12 76.3 81 56.8
COL.COLO4_26630 Corchorus olitorius HOM05D004849 ORTHO05D005955 1.7e-12 76.3 81 56.8
Glyma.17G016000 Glycine max HOM05D004849 ORTHO05D005955 1.7e-12 76.3 81 56.8
Lsat_1_v5_gn_9_81160 Lactuca sativa HOM05D004849 ORTHO05D005955 1.7e-12 76.3 102 50.0
SalBow2G0641 Salvia bowleyana HOM05D004849 ORTHO05D005955 1.7e-12 76.3 81 55.6
Cpa.g.sc147.13 Carica papaya HOM05D004849 ORTHO05D005955 2.2e-12 75.9 81 56.8
Manes.03G182800 Manihot esculenta HOM05D004849 ORTHO05D005955 2.2e-12 75.9 81 55.6
BcaB01g05137 Brassica carinata HOM05D004849 ORTHO05D005955 2.8e-12 75.5 81 55.6
PGSC0003DMG400008991 Solanum tuberosum HOM05D004849 ORTHO05D005955 2.8e-12 75.5 81 56.8
BcaB01g04873 Brassica carinata HOM05D004849 ORTHO05D005955 3.7e-12 75.1 81 54.3
Ca_21102_v3 Cicer arietinum L. HOM05D004849 ORTHO05D005955 3.7e-12 75.1 81 55.6
DCAR_027166 Daucus carota HOM05D004849 ORTHO05D005955 3.7e-12 75.1 81 54.3
Lalb_Chr18g0056171 Lupinus albus HOM05D004849 ORTHO05D005955 3.7e-12 75.1 82 54.9
Phvul.003G091500 Phaseolus vulgaris HOM05D004849 ORTHO05D005955 3.7e-12 75.1 81 55.6
VMungo1215G1989 Vigna mungo HOM05D004849 ORTHO05D005955 3.7e-12 75.1 81 55.6
GSVIVG01017905001 Vitis vinifera HOM05D004849 ORTHO05D005955 3.7e-12 75.1 81 55.6
Manes.15G024600 Manihot esculenta HOM05D004849 ORTHO05D005955 4.8e-12 74.7 81 55.6
Sp6g25195 Schrenkiella parvula HOM05D004849 ORTHO05D005955 4.8e-12 74.7 81 54.3
Cfa015600 Carpinus fangiana HOM05D004849 ORTHO05D005955 6.3e-12 74.3 81 54.3
Haze_00945 Corylus avellana HOM05D004849 ORTHO05D005955 6.3e-12 74.3 81 54.3
arahy.Tifrunner.gnm1.ann1.75KEF6 Arachis hypogaea HOM05D004849 ORTHO05D005955 8.2e-12 73.9 81 54.3
arahy.Tifrunner.gnm1.ann1.U1U343 Arachis hypogaea HOM05D004849 ORTHO05D005955 8.2e-12 73.9 81 54.3
MSTRG.4003 Avicennia marina HOM05D004849 ORTHO05D005955 8.2e-12 73.9 81 54.3
CARHR193770 Cardamine hirsuta HOM05D004849 ORTHO05D005955 8.2e-12 73.9 81 54.3
Potri.010G031900 Populus trichocarpa HOM05D004849 ORTHO05D005955 1.8e-11 72.8 81 54.3
CiPaw.01G161400 Carya illinoinensis HOM05D004849 ORTHO05D005955 2.4e-11 72.4 81 53.1
Sed0000406 Sechium edule HOM05D004849 ORTHO05D005955 2.4e-11 72.4 81 53.1
Lalb_Chr20g0118511 Lupinus albus HOM05D004849 ORTHO05D005955 3.1e-11 72.0 81 55.6
HPP92_001335 Vanilla planifolia HOM05D004849 ORTHO05D005955 3.1e-11 72.0 83 54.2
TWI73G0956 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 4.1e-11 71.6 81 53.1
Pp3c19_5590 Physcomitrium patens HOM05D004849 ORTHO05D005955 5.3e-11 71.2 81 54.3
AUR62038191 Chenopodium quinoa HOM05D004849 ORTHO05D005955 9.1e-11 70.5 81 50.6
TWI09G1150 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 9.1e-11 70.5 81 54.3
QL06p003788 Quercus lobata HOM05D004849 ORTHO05D005955 1.2e-10 70.1 81 50.6
SEGI_19294 Sequoiadendron giganteum HOM05D004849 ORTHO05D005955 1.2e-10 70.1 81 53.1
BolC3t13567H Brassica oleracea HOM05D004849 ORTHO05D005955 1.6e-10 69.7 85 52.9
A03p09400 Brassica napus HOM05D004849 ORTHO05D005955 2.0e-10 69.3 85 51.8
BraA03t10258Z Brassica rapa HOM05D004849 ORTHO05D005955 2.0e-10 69.3 85 51.8
Lj6A574T38 Lonicera japonica HOM05D004849 ORTHO05D005955 4.5e-10 68.2 81 51.9
ECA236G3497 Erigeron canadensis HOM05D004849 ORTHO05D005955 5.9e-10 67.8 81 51.9
Pp3c21_10350 Physcomitrium patens HOM05D004849 ORTHO05D005955 5.9e-10 67.8 81 53.1
C03p10980 Brassica napus HOM05D004849 ORTHO05D005955 1.3e-09 66.6 85 51.8
SHI00393 Sapria himalayana HOM05D004849 ORTHO05D005955 1.3e-09 66.6 80 51.2
AagrBONN_evm.TU.Sc2ySwM_368.1673 Anthoceros agrestis HOM05D004849 ORTHO05D005955 3.8e-09 65.1 80 50.0
AUR62038065 Chenopodium quinoa HOM05D004849 ORTHO05D005955 1.1e-08 63.5 81 49.4
Duzib151G0519 Durio zibethinus HOM05D004849 ORTHO05D005955 4.2e-08 61.6 107 42.1
Aa31LG11G10460 Aethionema arabicum HOM05D004849 ORTHO05D005955 5.5e-08 61.2 81 49.4
Thhalv10013467m.g Eutrema salsugineum HOM05D004849 ORTHO05D005955 5.5e-08 61.2 97 44.3
Atru.chr10.33 Acer truncatum HOM05D004849 ORTHO05D005955 7.2e-08 60.8 71 52.1
Os01g0271500 Oryza sativa ssp. japonica HOM05D004849 ORTHO05D005955 7.2e-08 60.8 84 47.6
DCAR_024593 Daucus carota HOM05D000983 ORTHO05D005955 1.2e-07 60.1 81 48.1
PRCOL_00002962 Prasinoderma coloniale HOM05D004849 ORTHO05D005955 1.2e-07 60.1 82 48.8
vmacro00753 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 1.6e-07 59.7 77 46.8
Cre12.g491500 Chlamydomonas reinhardtii HOM05D004849 ORTHO05D005955 2.1e-07 59.3 78 48.7
unitig_748.g8344 Utricularia gibba HOM05D004849 ORTHO05D005955 2.1e-07 59.3 70 52.9
Mapoly0032s0081 Marchantia polymorpha HOM05D004849 ORTHO05D005955 2.7e-07 58.9 77 49.4
vmacro19618 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 3.6e-07 58.5 109 38.5
Rhsim04G0203300 Rhododendron simsii HOM05D004849 ORTHO05D005955 8.0e-07 57.4 71 49.3
Cc03_g03260 Coffea canephora HOM05D004849 ORTHO05D005955 1.4e-06 56.6 81 48.1
A03p60030 Brassica napus HOM05D004849 ORTHO05D005955 4.0e-06 55.1 68 51.5
MCO07G571 Micromonas commoda HOM05D004849 ORTHO05D005955 8.8e-06 53.9 80 45.0


User provided reference genes

Program Settings