Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-90 336.3 167 100.0
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.6e-81 305.4 166 91.0
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.4e-80 300.8 166 90.4
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 1.9e-76 289.3 164 87.2
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-76 289.3 164 87.2
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.3e-76 288.5 164 86.6
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.3e-76 288.5 164 86.6
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 4.3e-76 288.1 164 86.6
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.6e-75 286.2 164 85.4
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 2.8e-75 285.4 164 86.0
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.8e-75 285.4 164 85.4
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 2.8e-75 285.4 164 86.0
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 2.8e-75 285.4 164 85.4
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 4.7e-75 284.6 164 86.0
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 6.2e-75 284.3 164 85.4
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 6.2e-75 284.3 164 85.4
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 8.1e-75 283.9 164 85.4
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 8.1e-75 283.9 164 85.4
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 8.1e-75 283.9 164 84.8
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 8.1e-75 283.9 164 85.4
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.4e-74 283.1 164 84.1
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 1.8e-74 282.7 164 84.8
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 1.8e-74 282.7 164 84.8
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.4e-74 282.3 164 84.8
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 2.4e-74 282.3 164 84.8
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 2.4e-74 282.3 165 83.6
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.4e-74 282.3 164 84.1
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.4e-74 282.3 164 84.1
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 2.4e-74 282.3 164 84.8
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 2.4e-74 282.3 164 84.8
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 3.1e-74 282.0 164 84.8
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 3.1e-74 282.0 164 84.1
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 4.0e-74 281.6 164 84.1
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 4.0e-74 281.6 164 84.1
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 4.0e-74 281.6 164 84.1
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 5.2e-74 281.2 164 82.9
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 5.2e-74 281.2 164 84.8
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 5.2e-74 281.2 164 83.5
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 5.2e-74 281.2 164 83.5
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 6.9e-74 280.8 164 84.8
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 6.9e-74 280.8 164 83.5
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 6.9e-74 280.8 164 84.1
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 6.9e-74 280.8 164 84.1
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 9.0e-74 280.4 164 83.5
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 9.0e-74 280.4 164 84.1
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 9.0e-74 280.4 164 83.5
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 9.0e-74 280.4 164 83.5
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 1.2e-73 280.0 164 82.9
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.5e-73 279.6 164 83.5
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 1.5e-73 279.6 164 83.5
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 1.5e-73 279.6 164 83.5
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.5e-73 279.6 164 84.1
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.5e-73 279.6 164 84.1
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.5e-73 279.6 164 83.5
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 1.5e-73 279.6 164 83.5
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.0e-73 279.3 164 83.5
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 2.0e-73 279.3 164 83.5
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.0e-73 279.3 200 73.0
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 2.0e-73 279.3 164 84.1
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 2.0e-73 279.3 164 82.9
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.0e-73 279.3 164 82.9
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 2.6e-73 278.9 164 84.1
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.6e-73 278.9 164 83.5
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 2.6e-73 278.9 164 83.5
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 2.6e-73 278.9 164 82.3
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 2.6e-73 278.9 164 82.9
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 3.4e-73 278.5 164 83.5
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 3.4e-73 278.5 164 82.9
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 4.4e-73 278.1 164 83.5
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 4.4e-73 278.1 164 82.9
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 4.4e-73 278.1 164 82.9
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 4.4e-73 278.1 164 82.9
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 4.4e-73 278.1 164 82.9
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 5.8e-73 277.7 164 82.9
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 5.8e-73 277.7 164 82.9
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 5.8e-73 277.7 164 82.9
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 5.8e-73 277.7 164 82.9
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 7.6e-73 277.3 164 81.7
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 7.6e-73 277.3 164 82.9
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 7.6e-73 277.3 164 83.5
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 7.6e-73 277.3 164 82.3
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 9.9e-73 276.9 164 82.9
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 9.9e-73 276.9 164 82.9
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 1.7e-72 276.2 164 82.9
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 1.7e-72 276.2 164 82.9
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.7e-72 276.2 164 82.3
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.2e-72 275.8 164 82.3
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 2.2e-72 275.8 164 81.7
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 2.9e-72 275.4 164 81.7
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 2.9e-72 275.4 175 80.0
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 3.8e-72 275.0 164 82.3
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.9e-72 274.6 164 82.9
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 4.9e-72 274.6 164 81.7
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 4.9e-72 274.6 164 81.7
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.1e-71 273.5 164 82.3
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.1e-71 273.5 164 82.3
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 1.9e-71 272.7 164 81.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 3.2e-71 271.9 164 82.3
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 5.4e-71 271.2 164 79.3
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 9.3e-71 270.4 164 80.5
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 1.2e-70 270.0 164 80.5
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 2.8e-67 258.8 144 86.8
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 3.6e-67 258.5 164 77.4
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.8e-66 256.1 144 85.4
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 4.0e-66 255.0 144 85.4
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.5e-65 253.1 164 73.8
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.5e-65 253.1 229 60.7
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 2.0e-65 252.7 144 84.7
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 4.9e-64 248.1 144 84.7
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 4.2e-63 245.0 145 82.1
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 5.4e-63 244.6 154 78.6
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 1.6e-62 243.0 143 83.2
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 8.7e-61 237.3 155 76.8
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.8e-59 231.5 154 76.6
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 5.8e-57 224.6 160 68.1
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 5.1e-53 211.5 120 84.2
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.6e-51 206.5 128 79.7
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 2.8e-51 205.7 165 61.8
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 6.9e-50 201.1 128 78.1
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 3.9e-45 185.3 129 72.1
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 9.0e-42 174.1 121 71.9
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.6e-38 163.3 103 77.7
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 3.0e-37 159.1 165 49.1
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 9.7e-36 154.1 114 69.3
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 4.8e-35 151.8 91 81.3
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 2.0e-33 146.4 78 92.3
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 2.6e-33 146.0 89 78.7
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 3.6e-30 135.6 76 86.8
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.8e-29 131.0 113 63.7
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 5.9e-25 118.2 130 53.1
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.4e-21 107.1 93 58.1
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.1e-20 104.0 71 71.8


User provided reference genes

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