Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.7e-197 690.3 345 100.0
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 6.7e-124 448.0 250 89.6
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 5.5e-118 428.3 231 92.6
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 1.2e-109 400.6 260 79.2
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 9.4e-102 374.4 236 81.4
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.9e-87 326.2 238 73.1
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 5.7e-83 312.0 263 65.8
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 4.1e-81 305.8 231 63.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 8.9e-76 288.1 269 58.0
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 7.5e-67 258.5 234 56.8
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 4.0e-60 236.1 228 51.8
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.5e-59 234.2 234 52.1
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 1.5e-59 234.2 232 52.2
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 1.5e-59 234.2 315 43.2
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 9.9e-59 231.5 235 53.6
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.9e-58 229.9 238 50.4
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 7.1e-57 225.3 235 50.2
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 3.5e-56 223.0 245 48.2
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.7e-55 220.7 235 48.5
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.7e-55 220.7 235 48.5
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 2.3e-55 220.3 234 50.9
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 2.3e-55 220.3 229 47.2
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 3.0e-55 219.9 195 58.5
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.2e-53 214.5 236 47.5
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.6e-53 214.2 231 49.4
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 3.6e-53 213.0 227 48.9
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 4.7e-53 212.6 237 46.4
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 6.2e-53 212.2 237 46.4
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 8.1e-53 211.8 227 48.0
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.4e-52 210.3 235 46.0
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 2.4e-52 210.3 234 47.9
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.0e-51 207.2 235 45.5
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 2.0e-51 207.2 230 45.2
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 2.0e-51 207.2 235 47.7
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 2.6e-51 206.8 233 47.2
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 5.8e-51 205.7 231 46.3
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 7.6e-51 205.3 231 46.8
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 9.9e-51 204.9 235 48.9
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 9.9e-51 204.9 229 45.9
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 2.2e-50 203.8 227 46.3
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 4.9e-50 202.6 235 44.7
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 8.4e-50 201.8 230 46.5
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 8.4e-50 201.8 235 48.5
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.1e-49 201.4 245 46.5
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 4.1e-49 199.5 241 49.0
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 5.4e-49 199.1 239 48.1
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.6e-48 197.6 230 43.0
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 1.6e-48 197.6 227 43.2
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 1.6e-48 197.6 228 43.0
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.1e-48 197.2 218 47.2
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.7e-47 194.1 234 44.0
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 2.3e-47 193.7 230 41.7
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 1.1e-46 191.4 247 45.7
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.5e-46 191.0 286 39.2
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.5e-46 191.0 229 42.4
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 2.8e-45 186.8 231 42.9
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 2.8e-45 186.8 245 44.5
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 2.8e-45 186.8 231 42.9
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 6.2e-45 185.7 227 44.1
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 1.1e-44 184.9 230 44.3
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 1.4e-44 184.5 231 42.4
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 1.4e-44 184.5 231 42.4
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 1.4e-44 184.5 231 42.4
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.4e-44 184.5 232 42.7
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 5.2e-44 182.6 228 43.0
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.2e-43 181.4 228 42.1
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.2e-43 181.4 228 42.1
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 1.2e-43 181.4 231 42.0
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 2.0e-43 180.6 248 44.0
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.0e-43 180.6 237 41.4
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 2.6e-43 180.3 230 41.7
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.6e-43 180.3 232 43.5
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 4.4e-43 179.5 231 42.0
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 4.4e-43 179.5 231 42.0
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 4.4e-43 179.5 246 41.9
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 5.8e-43 179.1 240 44.6
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 5.8e-43 179.1 230 41.3
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 9.9e-43 178.3 230 43.9
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 9.9e-43 178.3 231 41.1
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.7e-42 177.6 236 41.9
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 1.7e-42 177.6 230 40.4
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 8.4e-42 175.3 241 39.4
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.9e-41 174.1 230 45.2
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 1.9e-41 174.1 214 43.5
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.9e-41 174.1 258 39.9
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 1.2e-40 171.4 229 43.7
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 1.6e-40 171.0 213 44.6
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 1.6e-40 171.0 223 42.6
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 2.1e-40 170.6 194 46.9
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 2.7e-40 170.2 239 39.7
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 4.6e-40 169.5 284 39.8
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 1.0e-39 168.3 213 47.4
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 2.3e-39 167.2 209 45.0
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.9e-39 166.4 219 41.6
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 5.1e-39 166.0 224 42.9
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 5.1e-39 166.0 251 37.8
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 5.1e-39 166.0 226 44.7
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 8.7e-39 165.2 232 40.5
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 8.7e-39 165.2 232 41.8
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.5e-38 164.5 231 41.1
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.5e-38 164.5 244 37.7
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 7.3e-38 162.2 223 43.0
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 9.6e-38 161.8 230 42.6
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.4e-36 157.9 233 38.6
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 9.0e-36 155.2 237 37.1
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 3.4e-35 153.3 215 43.3
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 3.4e-35 153.3 215 43.3
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.5e-35 152.9 217 40.6
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 9.9e-35 151.8 225 40.9
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 2.2e-34 150.6 229 39.7
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 2.9e-34 150.2 223 40.8
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 3.8e-34 149.8 132 56.1
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 3.2e-33 146.7 235 34.9
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 3.2e-33 146.7 235 34.9
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.2e-33 146.4 186 45.7
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 2.1e-32 144.1 230 35.2
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.5e-32 143.3 225 36.9
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 7.9e-32 142.1 248 34.7
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.9e-30 137.5 136 52.9
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 3.3e-30 136.7 210 41.0
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 5.6e-30 136.0 243 37.0
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 4.9e-26 122.9 126 49.2
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 3.9e-23 113.2 85 58.8
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.9e-23 113.2 187 33.7
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 5.1e-23 112.8 139 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 6.7e-23 112.5 219 30.1
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 1.1e-20 105.1 239 29.7
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 9.0e-20 102.1 179 36.3
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 4.9e-18 96.3 91 50.5
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 4.9e-18 96.3 83 51.8
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.4e-17 94.7 64 64.1
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 4.2e-17 93.2 187 29.4
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 9.3e-17 92.0 120 41.7
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.2e-16 91.7 56 76.8
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.2e-16 91.7 56 76.8
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.0e-15 88.6 71 60.6
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 3.3e-14 83.6 124 39.5
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 7.4e-14 82.4 117 40.2
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 9.0e-12 75.5 102 40.2
FAN19G2929 Fragaria x ananassa HOM05D002736 ORTHO05D003882 1.2e-11 75.1 43 81.4
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 1.2e-11 75.1 63 50.8
FAN23G0252 Fragaria x ananassa HOM05D002736 ORTHO05D003882 1.5e-11 74.7 38 92.1
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 4.5e-11 73.2 82 45.1
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.5e-11 73.2 239 26.4
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.3e-10 71.6 60 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 9.3e-09 65.5 126 31.7
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 2.7e-08 63.9 58 50.0


User provided reference genes

Program Settings