Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.6e-186 656.4 443 100.0
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.5e-176 622.5 443 90.5
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.6e-173 612.5 443 90.5
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.8e-172 608.6 444 90.8
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 8.3e-143 511.1 450 82.9
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 7.8e-125 451.4 456 66.4
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 4.1e-110 402.5 464 65.5
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 9.6e-107 391.3 461 58.4
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.6e-106 390.6 243 83.5
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.4e-105 387.5 247 80.2
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.4e-105 387.5 263 76.8
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 3.1e-105 386.3 470 61.5
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 5.2e-105 385.6 458 60.5
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.2e-104 384.4 466 62.4
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.2e-104 384.4 466 62.2
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.2e-104 384.4 271 76.0
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.2e-104 384.4 271 75.6
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.2e-104 384.4 493 51.5
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.5e-104 384.0 473 57.5
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 3.4e-104 382.9 266 75.6
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.4e-104 382.9 271 75.3
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.4e-104 382.9 242 80.2
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 4.4e-104 382.5 248 79.8
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 9.9e-104 381.3 458 61.1
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 6.4e-103 378.6 447 57.3
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.1e-102 377.9 486 58.2
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.1e-102 377.9 244 79.5
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 1.9e-102 377.1 260 73.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.9e-102 377.1 244 80.3
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 2.4e-102 376.7 457 58.6
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 2.4e-102 376.7 447 59.1
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.4e-102 376.7 491 59.5
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.4e-102 376.7 451 54.1
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 3.2e-102 376.3 244 76.6
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 4.2e-102 375.9 487 60.8
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 5.4e-102 375.6 244 76.2
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 5.4e-102 375.6 244 76.6
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 7.1e-102 375.2 469 52.0
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.2e-101 374.4 244 76.2
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.6e-101 374.0 464 59.5
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.1e-101 373.6 469 59.9
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 4.6e-101 372.5 244 76.6
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.3e-100 370.9 457 59.5
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.3e-100 370.9 244 77.5
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.7e-100 370.5 244 78.3
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.3e-100 370.2 445 53.5
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.3e-100 370.2 472 55.5
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 2.3e-100 370.2 247 78.5
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 2.3e-100 370.2 464 62.3
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.0e-100 369.8 457 59.1
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 5.1e-100 369.0 462 57.8
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 8.7e-100 368.2 466 59.7
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.1e-99 367.9 457 61.9
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.9e-99 367.1 478 52.3
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 3.3e-99 366.3 241 78.4
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 4.3e-99 365.9 240 80.0
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.3e-98 364.4 485 53.0
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.6e-98 364.0 244 76.2
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.6e-98 364.0 256 71.5
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 3.6e-98 362.8 454 60.1
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.1e-97 361.3 440 54.5
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.8e-97 360.5 417 64.0
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.8e-97 360.5 274 70.8
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.8e-97 360.5 245 75.5
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 1.5e-96 357.5 455 61.5
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 1.5e-96 357.5 455 61.5
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.5e-96 357.5 257 72.4
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.3e-95 354.4 238 76.9
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 6.4e-95 352.1 272 68.8
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.1e-94 351.3 241 74.7
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.4e-94 350.9 477 52.8
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.9e-94 350.5 474 48.5
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 1.9e-94 350.5 257 70.8
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.2e-94 349.7 241 74.3
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 9.3e-94 348.2 245 73.5
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 4.6e-93 345.9 392 54.3
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 6.0e-93 345.5 507 50.7
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.3e-92 344.4 397 57.7
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.3e-92 343.6 447 53.7
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 2.3e-92 343.6 247 72.9
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 5.1e-92 342.4 243 71.2
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 8.7e-92 341.7 245 73.1
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.1e-91 341.3 244 72.5
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.3e-91 339.3 447 53.0
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 4.3e-91 339.3 243 72.8
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 9.6e-91 338.2 444 58.8
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 9.6e-91 338.2 239 72.0
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 9.6e-91 338.2 278 68.3
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 2.1e-90 337.0 248 69.4
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.8e-90 336.7 270 67.4
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 4.8e-90 335.9 262 67.6
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 4.8e-90 335.9 235 73.2
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.4e-89 333.6 245 71.0
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 3.1e-89 333.2 261 65.9
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 4.0e-89 332.8 245 72.2
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 5.3e-89 332.4 263 69.2
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.9e-89 332.0 245 71.8
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.9e-89 332.0 245 70.6
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 9.0e-89 331.6 256 69.5
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 2.0e-88 330.5 245 69.8
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 3.4e-88 329.7 374 57.0
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 4.5e-88 329.3 259 68.7
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 6.4e-87 325.5 231 71.4
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 3.2e-86 323.2 243 69.5
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 9.3e-86 321.6 266 65.4
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 3.0e-84 316.6 465 50.8
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 3.0e-84 316.6 277 62.8
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 2.5e-83 313.5 233 70.0
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 9.6e-83 311.6 244 66.8
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 6.9e-81 305.4 221 69.7
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 8.4e-79 298.5 457 53.0
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 7.1e-78 295.4 213 72.3
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 9.3e-78 295.0 237 63.7
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.9e-75 287.3 243 63.0
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.9e-75 287.3 253 61.3
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.3e-71 274.6 222 62.2
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 4.6e-69 266.2 470 45.1
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 3.4e-64 250.0 242 53.7
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 4.2e-54 216.5 243 48.1
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 7.7e-48 195.7 254 41.7
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 7.2e-46 189.1 245 44.9
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 4.7e-45 186.4 244 45.1
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.3e-42 178.3 112 78.6
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 3.5e-40 170.2 229 41.9
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 3.5e-40 170.2 246 40.7
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 9.4e-38 162.2 237 41.8
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 1.0e-36 158.7 89 83.1
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.8e-36 157.9 245 38.8
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.2e-34 151.0 243 38.3
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.5e-32 143.3 126 58.7
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.0e-31 142.1 300 47.3
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.2e-29 135.2 222 35.6
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.0e-28 132.1 227 37.9
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 8.8e-28 129.0 218 32.1
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 7.0e-25 119.4 225 32.0
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 1.2e-24 118.6 160 43.8
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 2.9e-23 114.0 214 30.4
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.6e-21 108.2 220 34.5
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 3.9e-15 87.0 282 42.9
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.6e-13 81.6 105 48.6
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 6.2e-13 79.7 126 39.7
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 8.0e-13 79.3 105 43.8
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.8e-12 78.2 238 29.8
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 3.1e-12 77.4 108 44.4
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 2.6e-11 74.3 211 29.4
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 8.3e-10 69.3 48 54.2
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 8.3e-10 69.3 179 31.3
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 2.4e-09 67.8 49 65.3
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 2.4e-09 67.8 54 48.1
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.5e-08 63.9 55 52.7


User provided reference genes

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