Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.7e-74 282.7 161 100.0
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 1.9e-73 279.3 161 98.8
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.9e-73 279.3 161 98.1
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.4e-71 273.1 137 98.5
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.5e-57 226.5 163 85.9
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 2.5e-49 199.1 161 77.6
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 2.0e-46 189.5 162 75.3
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 5.8e-46 188.0 159 73.0
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 1.1e-41 173.7 158 72.8
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.4e-39 166.8 130 65.4
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 3.4e-38 162.2 134 73.9
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 4.5e-38 161.8 128 62.5
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 1.7e-37 159.8 125 76.8
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.2e-37 159.5 150 61.3
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 3.8e-37 158.7 125 80.0
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 4.9e-37 158.3 165 65.5
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 4.9e-37 158.3 105 73.3
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 8.4e-37 157.5 138 58.7
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 1.1e-36 157.1 134 60.4
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.9e-36 156.4 132 75.0
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 5.5e-36 154.8 162 56.2
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 1.6e-35 153.3 102 73.5
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 1.6e-35 153.3 153 65.4
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.6e-35 153.3 118 82.2
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 3.5e-35 152.1 101 75.2
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 6.0e-35 151.4 124 75.0
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 1.3e-34 150.2 150 66.7
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.3e-34 150.2 101 74.3
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.8e-34 149.8 120 76.7
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.3e-34 149.4 158 62.7
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 3.0e-34 149.1 150 67.3
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 5.1e-34 148.3 137 58.4
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 8.7e-34 147.5 125 75.2
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 8.7e-34 147.5 155 56.1
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 1.1e-33 147.1 155 60.6
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.1e-33 147.1 84 78.6
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.5e-33 146.7 142 57.0
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 1.9e-33 146.4 126 75.4
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 2.5e-33 146.0 105 70.5
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 4.3e-33 145.2 111 64.9
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 7.4e-33 144.4 105 82.9
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 7.4e-33 144.4 130 60.8
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.3e-32 143.7 134 59.7
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 1.6e-32 143.3 103 82.5
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.8e-32 142.5 157 60.5
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 4.8e-32 141.7 80 81.2
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 4.8e-32 141.7 153 61.4
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.1e-31 140.6 129 66.7
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.1e-31 140.6 140 57.9
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.8e-31 139.8 129 70.5
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 2.4e-31 139.4 120 67.5
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.4e-31 139.4 80 76.2
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 3.1e-31 139.0 80 81.2
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 3.1e-31 139.0 80 81.2
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 4.1e-31 138.7 101 70.3
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 5.3e-31 138.3 100 73.0
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 6.9e-31 137.9 126 69.0
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.2e-30 137.1 101 69.3
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.5e-30 136.7 127 64.6
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 2.0e-30 136.3 92 68.5
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 3.4e-30 135.6 127 64.6
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.5e-30 135.2 142 53.5
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 5.9e-30 134.8 161 50.3
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 7.6e-30 134.4 100 82.0
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 7.6e-30 134.4 103 68.0
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 1.3e-29 133.7 141 64.5
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.3e-29 133.7 138 54.3
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 2.2e-29 132.9 127 65.4
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 3.8e-29 132.1 104 58.7
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 3.8e-29 132.1 123 66.7
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 3.8e-29 132.1 103 61.2
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 3.8e-29 132.1 77 77.9
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 8.5e-29 131.0 127 63.0
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 8.5e-29 131.0 112 58.0
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 8.5e-29 131.0 96 82.3
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 1.1e-28 130.6 127 61.4
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.4e-28 130.2 89 65.2
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.9e-28 129.8 80 76.2
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 1.9e-28 129.8 131 53.4
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.9e-28 129.8 119 70.6
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.5e-28 129.4 98 65.3
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 3.2e-28 129.0 89 64.0
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 3.2e-28 129.0 80 72.5
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 4.2e-28 128.6 149 57.7
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 5.5e-28 128.3 142 53.5
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 7.2e-28 127.9 104 58.7
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 7.2e-28 127.9 99 62.6
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 7.2e-28 127.9 80 72.5
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 1.2e-27 127.1 104 56.7
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 1.2e-27 127.1 104 56.7
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 1.2e-27 127.1 104 56.7
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 1.2e-27 127.1 104 56.7
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 1.6e-27 126.7 80 71.2
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 2.1e-27 126.3 135 65.2
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 2.1e-27 126.3 96 64.6
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 2.7e-27 125.9 94 66.0
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 3.6e-27 125.6 99 65.7
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 4.6e-27 125.2 98 63.3
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 4.6e-27 125.2 140 52.9
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 7.9e-27 124.4 109 53.2
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 7.9e-27 124.4 138 50.7
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.3e-26 123.6 81 65.4
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 3.9e-26 122.1 78 69.2
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.1e-25 120.6 81 67.9
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 1.5e-25 120.2 146 57.5
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 3.3e-25 119.0 93 65.6
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 5.7e-25 118.2 131 48.1
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 7.4e-25 117.9 98 73.5
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 4.8e-24 115.2 86 60.5
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 6.3e-24 114.8 114 55.3
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 4.1e-23 112.1 115 60.0
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 4.1e-23 112.1 136 56.6
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 6.9e-23 111.3 137 49.6
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 9.1e-23 110.9 72 73.6
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 9.1e-23 110.9 111 58.6
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.2e-22 110.5 111 58.6
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.0e-21 107.5 111 53.2
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 8.5e-21 104.4 143 55.9
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 3.2e-20 102.4 125 52.8
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 4.2e-20 102.1 129 46.5
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 1.8e-18 96.7 104 50.0
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 1.7e-16 90.1 79 58.2
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 4.8e-16 88.6 101 47.5
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 4.8e-16 88.6 101 47.5
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.1e-15 87.4 57 66.7
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 3.1e-15 85.9 72 58.3
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 5.3e-15 85.1 110 44.5
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.6e-14 82.8 81 69.1
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.6e-14 82.8 81 69.1
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 5.9e-14 81.6 81 59.3
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 1.7e-13 80.1 85 50.6
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 6.1e-11 71.6 82 51.2
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 2.2e-08 63.2 67 61.2
Sabra19G0050600 Salix brachista HOM05D005516 ORTHO05D006713 8.2e-08 61.2 97 44.3
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 7.7e-06 54.7 43 58.1


User provided reference genes

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