Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0135 Fragaria x ananassa HOM05D004461 ORTHO05D005543 0.0e+00 2606.2 1328 100.0
FvH4_1g00530 Fragaria vesca HOM05D004461 ORTHO05D005543 0.0e+00 2551.9 1328 96.2
FAN28G0648 Fragaria x ananassa HOM05D004461 ORTHO05D005543 0.0e+00 2519.2 1328 95.2
RcHm_v2.0_Chr2g0085161 Rosa chinensis HOM05D004461 ORTHO05D005543 0.0e+00 2479.1 1328 92.9
FAN26G3123 Fragaria x ananassa HOM05D004461 ORTHO05D005543 0.0e+00 2478.0 1338 93.3
Prupe.7G266700 Prunus persica HOM05D004461 ORTHO05D005543 0.0e+00 2254.2 1330 83.7
MD15G1148100 Malus domestica HOM05D004461 ORTHO05D005543 0.0e+00 2211.0 1330 82.6
MD02G1004400 Malus domestica HOM05D004461 ORTHO05D005543 0.0e+00 2196.4 1330 82.1
CANSAT56G3181 Cannabis sativa HOM05D004461 ORTHO05D005543 0.0e+00 1999.9 1334 74.7
Atru.chr4.1475 Acer truncatum HOM05D004461 ORTHO05D005543 0.0e+00 1981.5 1336 74.9
Thecc.04G163000 Theobroma cacao HOM05D004461 ORTHO05D005543 0.0e+00 1976.1 1331 74.1
Dinv33221 Davidia involucrata HOM05D004461 ORTHO05D005543 0.0e+00 1971.8 1331 74.4
QL10p057561 Quercus lobata HOM05D004461 ORTHO05D005543 0.0e+00 1971.8 1372 73.8
COL.COLO4_08073 Corchorus olitorius HOM05D004461 ORTHO05D005543 0.0e+00 1968.7 1333 73.4
CSS0001430 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 0.0e+00 1962.6 1333 73.2
Duzib268G0878 Durio zibethinus HOM05D004461 ORTHO05D005543 0.0e+00 1949.1 1334 73.3
Haze_00857 Corylus avellana HOM05D004461 ORTHO05D005543 0.0e+00 1942.5 1362 72.9
TAR623G0001 Trochodendron aralioides HOM05D004461 ORTHO05D005543 0.0e+00 1923.7 1336 73.4
Manes.05G186753 Manihot esculenta HOM05D004461 ORTHO05D005543 0.0e+00 1915.6 1338 71.9
Actinidia18410 Actinidia chinensis HOM05D004461 ORTHO05D005543 0.0e+00 1911.7 1342 71.5
Gorai.006G232600 Gossypium raimondii HOM05D004461 ORTHO05D005543 0.0e+00 1911.0 1333 72.0
Gohir.D09G212800 Gossypium hirsutum HOM05D004461 ORTHO05D005543 0.0e+00 1906.3 1333 71.9
Gohir.A09G213618 Gossypium hirsutum HOM05D004461 ORTHO05D005543 0.0e+00 1902.1 1333 72.0
Dinv13732 Davidia involucrata HOM05D004461 ORTHO05D005543 0.0e+00 1895.6 1331 72.1
Rhsim09G0007800 Rhododendron simsii HOM05D004461 ORTHO05D005543 0.0e+00 1881.3 1392 69.3
Lalb_Chr16g0384381 Lupinus albus HOM05D004461 ORTHO05D005543 0.0e+00 1874.0 1332 71.7
Lj4g0007039 Lotus japonicus HOM05D004461 ORTHO05D005543 0.0e+00 1870.5 1329 70.6
Cc03_g14480 Coffea canephora HOM05D004461 ORTHO05D005543 0.0e+00 1861.3 1331 69.7
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 0.0e+00 1855.5 1332 71.3
Phvul.003G059900 Phaseolus vulgaris HOM05D004461 ORTHO05D005543 0.0e+00 1855.5 1331 70.2
Glyma.02G138500 Glycine max HOM05D004461 ORTHO05D005543 0.0e+00 1853.2 1331 70.0
Potri.013G128500 Populus trichocarpa HOM05D004461 ORTHO05D005543 0.0e+00 1852.0 1352 69.2
ClCG11G016890 Citrullus lanatus HOM05D004461 ORTHO05D005543 0.0e+00 1848.9 1335 70.0
Nn1g07161 Nelumbo nucifera HOM05D004461 ORTHO05D005543 0.0e+00 1848.6 1340 69.4
Ca_18625_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 0.0e+00 1844.3 1335 70.0
Sabra13G0107300 Salix brachista HOM05D004461 ORTHO05D005543 0.0e+00 1840.9 1351 68.5
PGR042G2498 Punica granatum HOM05D004461 ORTHO05D005543 0.0e+00 1833.9 1326 68.9
TWI75G0299 Tripterygium wilfordii HOM05D004461 ORTHO05D005543 0.0e+00 1833.5 1334 69.3
VMungo0251G2958 Vigna mungo HOM05D004461 ORTHO05D005543 0.0e+00 1833.2 1335 69.4
Glyma.07G206500 Glycine max HOM05D004461 ORTHO05D005543 0.0e+00 1832.0 1332 69.2
CsaV3_4G032510 Cucumis sativus L. HOM05D004461 ORTHO05D005543 0.0e+00 1830.8 1335 69.2
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 0.0e+00 1830.5 1331 69.8
arahy.Tifrunner.gnm1.ann1.XYX0FU Arachis hypogaea HOM05D004461 ORTHO05D005543 0.0e+00 1827.0 1393 68.1
Psat7g119400 Pisum sativum HOM05D004461 ORTHO05D005543 0.0e+00 1823.9 1333 69.2
MELO3C026365.2 Cucumis melo HOM05D004461 ORTHO05D005543 0.0e+00 1819.3 1353 68.5
Eucgr.L00012 Eucalyptus grandis HOM05D004461 ORTHO05D005543 0.0e+00 1807.7 1331 68.2
Medtr4g087530 Medicago truncatula HOM05D004461 ORTHO05D005543 0.0e+00 1803.9 1333 68.6
MSTRG.9726 Avicennia marina HOM05D004461 ORTHO05D005543 0.0e+00 1801.6 1332 67.6
Lju470C15G3 Lonicera japonica HOM05D004461 ORTHO05D005543 0.0e+00 1801.6 1332 68.8
PSO541G3578 Papaver somniferum HOM05D004461 ORTHO05D005543 0.0e+00 1798.5 1340 67.3
Sc25g0002880 Simmondsia chinensis HOM05D004461 ORTHO05D005543 0.0e+00 1791.2 1329 67.0
Sopen08g013610 Solanum pennellii HOM05D004461 ORTHO05D005543 0.0e+00 1790.4 1329 67.3
PSO675G1807 Papaver somniferum HOM05D004461 ORTHO05D005543 0.0e+00 1788.1 1340 67.3
CAN.G1190.30 Capsicum annuum HOM05D004461 ORTHO05D005543 0.0e+00 1785.0 1331 66.9
Hund22530 Selenicereus undatus HOM05D004461 ORTHO05D005543 0.0e+00 1776.9 1335 67.3
Migut.A00584 Erythranthe guttata HOM05D004461 ORTHO05D005543 0.0e+00 1776.5 1335 67.0
Aqoxy1G02097 Aquilegia oxysepala HOM05D004461 ORTHO05D005543 0.0e+00 1763.4 1338 66.7
EL10Ac3g06109 Beta vulgaris HOM05D004461 ORTHO05D005543 0.0e+00 1763.4 1425 64.1
Atru.chr4.1504 Acer truncatum HOM05D004461 ORTHO05D005543 0.0e+00 1758.4 1239 73.0
SalBow1G4521 Salvia bowleyana HOM05D004461 ORTHO05D005543 0.0e+00 1749.9 1368 64.8
SalBow1G6497 Salvia bowleyana HOM05D004461 ORTHO05D005543 0.0e+00 1748.0 1372 64.6
DCAR_005452 Daucus carota HOM05D004461 ORTHO05D005543 0.0e+00 1739.9 1330 65.9
GSVIVG01038186001 Vitis vinifera HOM05D004461 ORTHO05D005543 0.0e+00 1718.4 1334 68.1
A07p24810 Brassica napus HOM05D004461 ORTHO05D005543 0.0e+00 1717.6 1336 64.8
Sp5g03430 Schrenkiella parvula HOM05D004461 ORTHO05D005543 0.0e+00 1714.5 1335 65.1
BraA07t30125Z Brassica rapa HOM05D004461 ORTHO05D005543 0.0e+00 1714.1 1336 64.9
BcaC08g45004 Brassica carinata HOM05D004461 ORTHO05D005543 0.0e+00 1711.8 1335 64.4
BolC6t37801H Brassica oleracea HOM05D004461 ORTHO05D005543 0.0e+00 1711.8 1335 64.4
AUR62002415 Chenopodium quinoa HOM05D004461 ORTHO05D005543 0.0e+00 1708.7 1333 65.1
AUR62023774 Chenopodium quinoa HOM05D004461 ORTHO05D005543 0.0e+00 1708.7 1334 65.1
C06p26390 Brassica napus HOM05D004461 ORTHO05D005543 0.0e+00 1708.0 1335 64.3
Carub.0005s2648 Capsella rubella HOM05D004461 ORTHO05D005543 0.0e+00 1707.6 1336 64.8
AT3G59770 Arabidopsis thaliana HOM05D004461 ORTHO05D005543 0.0e+00 1704.9 1337 64.5
AL5G41810 Arabidopsis lyrata HOM05D004461 ORTHO05D005543 0.0e+00 1704.5 1335 64.5
Thhalv10005739m.g Eutrema salsugineum HOM05D004461 ORTHO05D005543 0.0e+00 1703.0 1332 64.7
BcaB02g07448 Brassica carinata HOM05D004461 ORTHO05D005543 0.0e+00 1702.6 1335 64.3
BraA09t40637Z Brassica rapa HOM05D004461 ORTHO05D005543 0.0e+00 1696.4 1336 64.2
A09p52040 Brassica napus HOM05D004461 ORTHO05D005543 0.0e+00 1695.2 1336 64.3
Aa31LG10G14020 Aethionema arabicum HOM05D004461 ORTHO05D005543 0.0e+00 1690.2 1377 63.5
BcaC07g40444 Brassica carinata HOM05D004461 ORTHO05D005543 0.0e+00 1690.2 1338 64.1
C08p34720 Brassica napus HOM05D004461 ORTHO05D005543 0.0e+00 1684.8 1336 63.9
BcaC07g40502 Brassica carinata HOM05D004461 ORTHO05D005543 0.0e+00 1677.5 1336 63.8
BolC8t51074H Brassica oleracea HOM05D004461 ORTHO05D005543 0.0e+00 1674.4 1352 63.2
Gorai.005G010100 Gossypium raimondii HOM05D004461 ORTHO05D005543 0.0e+00 1673.7 1321 65.9
Nn1g03495 Nelumbo nucifera HOM05D004461 ORTHO05D005543 0.0e+00 1662.9 1244 67.0
ECA233G2329 Erigeron canadensis HOM05D004461 ORTHO05D005543 0.0e+00 1650.2 1333 63.8
Solyc08g044400.3 Solanum lycopersicum HOM05D004461 ORTHO05D005543 0.0e+00 1630.5 1235 66.2
SGA_v2.0_scaffold90G27634 Striga asiatica HOM05D004461 ORTHO05D005543 0.0e+00 1600.5 1355 63.1
Lsat_1_v5_gn_7_77561 Lactuca sativa HOM05D004461 ORTHO05D005543 0.0e+00 1575.1 1345 61.3
Peaxi162Scf00883g00910 Petunia axillaris HOM05D004461 ORTHO05D005543 0.0e+00 1572.8 1236 64.6
HanXRQChr04g0109651 Helianthus annuus HOM05D004461 ORTHO05D005543 0.0e+00 1570.1 1348 61.6
ATR0796G101 Amborella trichopoda HOM05D004461 ORTHO05D005543 0.0e+00 1532.3 1354 58.4
Duzib212G0381 Durio zibethinus HOM05D004461 ORTHO05D005543 0.0e+00 1498.8 1332 59.5
unitig_736.g22475 Utricularia gibba HOM05D004461 ORTHO05D005543 0.0e+00 1454.1 1332 58.0
ECA248G0881 Erigeron canadensis HOM05D004461 ORTHO05D005543 0.0e+00 1442.9 1332 57.1
HPP92_017806 Vanilla planifolia HOM05D004461 ORTHO05D005543 0.0e+00 1434.9 1396 53.3
HanXRQChr01g0023421 Helianthus annuus HOM05D004461 ORTHO05D005543 0.0e+00 1392.9 1333 56.2
Sed0020878 Sechium edule HOM05D004461 ORTHO05D005543 0.0e+00 1356.3 982 69.9
Zm00001eb208570 Zea mays HOM05D004461 ORTHO05D005543 0.0e+00 1342.0 1357 53.2
Ah.13g073400 Amaranthus hybridus HOM05D004461 ORTHO05D005543 0.0e+00 1336.2 971 68.8
THA.LOC104802333 Tarenaya hassleriana HOM05D004461 ORTHO05D005543 0.0e+00 1332.0 986 68.5
Lsat_1_v5_gn_1_74200 Lactuca sativa HOM05D004461 ORTHO05D005543 0.0e+00 1320.1 1337 54.5
Sed0010516 Sechium edule HOM05D004461 ORTHO05D005543 0.0e+00 1225.3 1094 60.0
CARHR170110 Cardamine hirsuta HOM05D004461 ORTHO05D005543 0.0e+00 1144.8 1015 58.9
SHI26120 Sapria himalayana HOM05D004461 ORTHO05D005543 0.0e+00 1089.3 920 61.5
CSS0004381 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 9.0e-294 1014.2 802 65.0
Os01g0355600 Oryza sativa ssp. japonica HOM05D004461 ORTHO05D005543 1.8e-278 963.4 1131 49.0
Cpa.g.sc343.6 Carica papaya HOM05D004461 ORTHO05D005543 3.4e-277 959.1 1331 44.1
Nitab4.5_0000474g0010 Nicotiana tabacum HOM05D004461 ORTHO05D005543 3.2e-275 952.6 635 73.2
Nitab4.5_0002660g0030 Nicotiana tabacum HOM05D004461 ORTHO05D005543 2.7e-274 949.5 633 73.6
SMO165G0142 Selaginella moellendorffii HOM05D004461 ORTHO05D005543 1.6e-266 923.7 1340 41.3
Gohir.D02G008532 Gossypium hirsutum HOM05D004461 ORTHO05D005543 1.5e-264 917.1 898 56.8
Gohir.A02G008301 Gossypium hirsutum HOM05D004461 ORTHO05D005543 5.7e-264 915.2 898 56.3
AagrBONN_evm.TU.Sc2ySwM_362.1413 Anthoceros agrestis HOM05D004461 ORTHO05D005543 1.8e-262 910.2 1359 41.4
Mapoly0056s0107 Marchantia polymorpha HOM05D004461 ORTHO05D005543 3.6e-258 896.0 1408 39.2
Pp3c2_24100 Physcomitrium patens HOM05D004461 ORTHO05D005543 2.4e-254 883.2 1359 39.2
Ciclev10018900m.g Citrus clementina HOM05D004461 ORTHO05D005543 4.0e-233 812.8 440 86.8
Nitab4.5_0000474g0020 Nicotiana tabacum HOM05D004461 ORTHO05D005543 1.2e-232 811.2 685 61.0
CDE04G2300 Ceratophyllum demersum HOM05D004461 ORTHO05D005543 6.4e-223 778.9 931 46.7
vmacro00682 Vaccinium macrocarpon HOM05D004461 ORTHO05D005543 1.2e-213 748.0 408 87.3
CSS0024115 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 1.3e-212 744.6 408 87.0
SGA_v2.0_scaffold96G29048 Striga asiatica HOM05D004461 ORTHO05D005543 9.6e-187 658.7 693 54.0
Nitab4.5_0002660g0040 Nicotiana tabacum HOM05D004461 ORTHO05D005543 8.2e-178 629.0 691 50.9
CSS0041950 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 2.5e-163 580.9 316 88.3
Gohir.D02G008466 Gossypium hirsutum HOM05D004461 ORTHO05D005543 5.3e-153 546.6 310 83.5
BcaC07g40445 Brassica carinata HOM05D004461 ORTHO05D005543 1.0e-135 489.2 416 61.8
CiPaw.01G169500 Carya illinoinensis HOM05D004461 ORTHO05D005543 1.0e-135 489.2 352 69.6
CBR_g55037 Chara braunii HOM05D004461 ORTHO05D005543 7.2e-134 483.0 1883 25.8
Ciclev10021462m.g Citrus clementina HOM05D004461 ORTHO05D005543 8.8e-132 476.1 257 86.4
CDE09G0162 Ceratophyllum demersum HOM05D004461 ORTHO05D005543 3.3e-126 457.6 331 66.5
Eucgr.G01607 Eucalyptus grandis HOM05D004461 ORTHO05D005543 7.3e-118 429.9 336 64.0
SEGI_09597 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 6.8e-116 423.3 313 63.6
vmacro00709 Vaccinium macrocarpon HOM05D004461 ORTHO05D005543 3.2e-105 387.9 440 50.5
TAR624G0657 Trochodendron aralioides HOM05D004461 ORTHO05D005543 6.6e-103 380.2 366 57.9
FAN23G0644 Fragaria x ananassa HOM05D004461 ORTHO05D005543 7.3e-94 350.1 166 100.0
Gohir.D02G008175 Gossypium hirsutum HOM05D004461 ORTHO05D005543 1.1e-89 336.3 333 57.1
SEGI_23669 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 1.9e-78 298.9 347 47.0
MBI11_g07551_MAGBIO Magnolia biondii HOM05D004461 ORTHO05D005543 1.6e-77 295.8 329 52.0
SEGI_16668 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 1.3e-74 286.2 330 49.1
TAR624G0217 Trochodendron aralioides HOM05D004461 ORTHO05D005543 8.4e-66 256.9 268 54.1
SEGI_12893 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 2.5e-65 255.4 362 43.6
PRCOL_00002927 Prasinoderma coloniale HOM05D004461 ORTHO05D005543 1.4e-52 213.0 573 30.2
MCO04G405 Micromonas commoda HOM05D004461 ORTHO05D005543 3.4e-51 208.4 386 33.2
TAR624G0560 Trochodendron aralioides HOM05D004461 ORTHO05D005543 6.1e-40 171.0 136 64.7
Solyc08g044410.1 Solanum lycopersicum HOM05D004461 ORTHO05D005543 9.7e-38 163.7 95 81.1
Lsat_1_v5_gn_3_101581 Lactuca sativa HOM05D004461 ORTHO05D029960 2.2e-37 162.5 130 60.0
Lsat_1_v5_gn_2_119641 Lactuca sativa HOM05D004461 ORTHO05D029960 5.3e-36 157.9 128 59.4
Atru.chr4.1505 Acer truncatum HOM05D004461 ORTHO05D005543 2.6e-35 155.6 90 80.0
Nn1g03496 Nelumbo nucifera HOM05D004461 ORTHO05D005543 2.3e-31 142.5 90 74.4
Lsat_1_v5_gn_3_104101 Lactuca sativa HOM05D004461 ORTHO05D005543 2.6e-22 112.5 225 38.7
BcaB02g08211 Brassica carinata HOM05D021787 ORTHO05D005543 2.2e-18 99.4 102 51.0
SHI26123 Sapria himalayana HOM05D004461 ORTHO05D029960 4.2e-17 95.1 76 61.8
Cre01.g009300 Chlamydomonas reinhardtii HOM05D004461 ORTHO05D005543 7.0e-12 77.8 176 31.2
Sabra19G0110100 Salix brachista HOM05D002050 ORTHO05D001949 1.0e-07 63.9 77 46.8
Oeu006744.1 Olea europaea HOM05D001035 ORTHO05D001045 4.0e-07 62.0 321 23.7
VMungo0331G1347 Vigna mungo HOM05D001035 ORTHO05D001045 6.8e-07 61.2 338 22.2
Ciclev10020582m.g Citrus clementina HOM05D002050 ORTHO05D001949 1.5e-06 60.1 44 65.9
Manes.03G044800 Manihot esculenta HOM05D001035 ORTHO05D001045 1.5e-06 60.1 333 23.1
A01p39480 Brassica napus HOM05D001035 ORTHO05D001045 2.0e-06 59.7 324 24.1
Gohir.D07G017000 Gossypium hirsutum HOM05D001035 ORTHO05D001045 2.0e-06 59.7 331 23.9
Gorai.001G017800 Gossypium raimondii HOM05D001035 ORTHO05D001045 2.6e-06 59.3 331 23.9
C01p50420 Brassica napus HOM05D001035 ORTHO05D001045 5.7e-06 58.2 324 24.1


User provided reference genes

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