Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.5e-68 261.5 134 100.0
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 2.7e-52 208.8 132 84.8
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.7e-52 208.8 132 84.8
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 4.5e-52 208.0 134 85.1
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.3e-51 206.5 132 83.3
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 8.8e-48 193.7 128 75.0
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 1.2e-47 193.4 130 77.7
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 3.4e-47 191.8 128 77.3
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 4.4e-47 191.4 128 70.3
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 3.1e-45 185.3 130 67.7
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 5.4e-45 184.5 128 64.8
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 2.0e-44 182.6 133 68.4
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 2.0e-44 182.6 128 66.4
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 1.7e-43 179.5 132 71.2
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.5e-42 175.6 129 68.2
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 7.2e-42 174.1 130 64.6
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 7.2e-42 174.1 136 64.7
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-41 173.3 128 62.5
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.2e-41 173.3 128 62.5
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.6e-41 172.9 129 69.8
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.7e-41 171.4 128 64.8
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 4.7e-41 171.4 130 71.5
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.1e-41 171.0 128 64.1
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 8.0e-41 170.6 128 68.8
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.4e-40 169.9 128 66.4
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.8e-40 169.5 128 62.5
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.3e-40 169.1 131 62.6
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 2.3e-40 169.1 129 62.8
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 2.3e-40 169.1 130 71.5
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 2.3e-40 169.1 128 62.5
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 1.5e-39 166.4 129 63.6
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 2.2e-38 162.5 129 61.2
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.9e-38 162.2 128 66.4
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 3.7e-38 161.8 128 67.2
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 6.4e-38 161.0 129 59.7
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.1e-37 160.2 128 64.8
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 1.8e-37 159.5 128 67.2
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 5.4e-37 157.9 130 57.7
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.0e-36 156.0 128 65.6
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 2.7e-36 155.6 128 66.4
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.0e-35 153.7 129 58.9
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 1.0e-35 153.7 149 61.7
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 2.3e-35 152.5 129 58.1
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.9e-35 152.1 128 64.1
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 1.1e-34 150.2 136 57.4
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 1.5e-34 149.8 140 52.1
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 3.3e-34 148.7 139 57.6
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 5.6e-34 147.9 118 59.3
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 1.6e-33 146.4 128 64.1
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 3.6e-33 145.2 129 62.0
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 4.7e-33 144.8 129 59.7
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 6.2e-33 144.4 130 54.6
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 1.0e-32 143.7 131 58.8
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 1.4e-32 143.3 134 58.2
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.4e-32 143.3 127 58.3
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.8e-32 142.9 123 56.9
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 2.3e-32 142.5 130 56.2
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 8.9e-32 140.6 128 58.6
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 2.0e-31 139.4 123 63.4
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.4e-31 138.7 131 53.4
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 4.4e-31 138.3 132 54.5
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 4.4e-31 138.3 132 55.3
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 5.8e-31 137.9 131 52.7
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 5.8e-31 137.9 128 61.7
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 1.3e-30 136.7 128 55.5
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 6.4e-30 134.4 128 53.9
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 6.4e-30 134.4 128 60.2
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 8.3e-30 134.0 128 56.2
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 8.3e-30 134.0 128 52.3
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 1.1e-29 133.7 128 49.2
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 1.1e-29 133.7 128 52.3
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 2.4e-29 132.5 95 61.1
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 4.1e-29 131.7 128 59.4
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 9.2e-29 130.6 127 49.6
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 1.6e-28 129.8 127 54.3
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.0e-28 129.4 127 48.8
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 2.7e-28 129.0 147 46.3
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 5.0e-27 124.8 128 50.8
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.1e-26 123.6 90 68.9
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.5e-26 123.2 136 47.1
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.9e-26 122.9 105 58.1
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 1.9e-26 122.9 105 58.1
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 5.6e-26 121.3 76 69.7
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 5.6e-26 121.3 128 55.5
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 7.3e-26 120.9 120 55.0
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 9.5e-26 120.6 117 54.7
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.2e-25 120.2 131 48.1
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 1.2e-25 120.2 78 70.5
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 1.6e-25 119.8 86 61.6
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 1.4e-24 116.7 130 47.7
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 1.4e-24 116.7 128 52.3
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 1.8e-24 116.3 93 57.0
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.8e-24 116.3 130 47.7
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 2.3e-24 115.9 130 47.7
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 4.0e-24 115.2 131 53.4
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.2e-24 114.8 78 67.9
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.8e-24 114.4 61 98.4
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.2e-23 113.6 129 46.5
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 3.4e-23 112.1 89 64.0
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 4.4e-23 111.7 107 57.0
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 5.8e-23 111.3 119 48.7
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 5.8e-23 111.3 108 53.7
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 7.5e-23 110.9 126 49.2
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 9.8e-23 110.5 121 53.7
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.7e-22 108.6 120 52.5
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 3.7e-22 108.6 111 45.9
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.9e-22 108.2 133 46.6
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 6.4e-22 107.8 105 54.3
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 6.4e-22 107.8 134 47.8
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 6.4e-22 107.8 128 43.0
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 1.4e-21 106.7 133 45.9
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 1.4e-21 106.7 122 50.8
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 2.4e-21 105.9 103 57.3
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 3.2e-21 105.5 100 54.0
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 3.2e-21 105.5 100 54.0
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 3.2e-21 105.5 78 60.3
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 3.2e-21 105.5 135 48.1
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 7.1e-21 104.4 137 48.2
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 9.2e-21 104.0 95 60.0
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 9.2e-21 104.0 66 69.7
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 2.1e-20 102.8 125 48.8
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 2.7e-20 102.4 67 68.7
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 2.7e-20 102.4 89 61.8
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 2.7e-20 102.4 89 61.8
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 2.7e-20 102.4 131 42.7
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 2.7e-20 102.4 79 67.1
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 3.5e-20 102.1 113 47.8
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 4.6e-20 101.7 101 57.4
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 6.0e-20 101.3 127 50.4
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 7.8e-20 100.9 107 49.5
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 1.0e-19 100.5 131 50.4
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 1.0e-19 100.5 67 62.7
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 1.3e-19 100.1 89 53.9
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 1.3e-19 100.1 122 48.4
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.3e-19 100.1 127 49.6
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.3e-19 100.1 127 49.6
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.7e-19 99.8 128 49.2
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 2.3e-19 99.4 127 50.4
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 3.0e-19 99.0 89 59.6
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 5.1e-19 98.2 105 47.6
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 6.6e-19 97.8 129 45.7
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 6.6e-19 97.8 84 65.5
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 8.6e-19 97.4 92 51.1
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 8.6e-19 97.4 127 48.8
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 7.3e-18 94.4 128 43.8
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 9.5e-18 94.0 88 60.2
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 9.5e-18 94.0 133 43.6
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 1.2e-17 93.6 132 47.7
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 1.2e-17 93.6 133 46.6
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.2e-17 93.6 134 41.0
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 1.2e-17 93.6 105 46.7
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 1.6e-17 93.2 125 40.0
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 1.6e-17 93.2 125 40.0
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 2.8e-17 92.4 104 47.1
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 2.8e-17 92.4 104 47.1
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 2.8e-17 92.4 125 48.8
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 2.8e-17 92.4 75 53.3
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 3.6e-17 92.0 134 42.5
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 4.7e-17 91.7 86 58.1
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 8.1e-17 90.9 128 39.1
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.4e-16 90.1 128 39.1
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 1.8e-16 89.7 86 50.0
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 1.8e-16 89.7 79 51.9
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 1.8e-16 89.7 130 45.4
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 1.8e-16 89.7 92 56.5
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 4.0e-16 88.6 106 42.5
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 5.2e-16 88.2 132 41.7
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 5.2e-16 88.2 95 57.9
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.2e-15 87.0 136 39.7
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 2.0e-15 86.3 109 42.2
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 2.0e-15 86.3 131 45.8
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.7e-14 83.2 101 45.5
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 8.4e-14 80.9 128 44.5
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.9e-13 79.7 102 50.0
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 1.9e-13 79.7 67 52.2
Sabra18G0060200 Salix brachista HOM05D003537 ORTHO05D004180 2.4e-13 79.3 154 39.6
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 2.1e-12 76.3 61 68.9
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 1.7e-11 73.2 102 39.2
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 2.3e-11 72.8 92 47.8
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 3.0e-11 72.4 83 45.8
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.3e-10 68.6 99 47.5
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.6e-10 67.4 64 54.7
Gohir.A10G065840 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.1e-09 64.3 49 63.3
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.4e-08 62.8 50 58.0
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.4e-08 62.8 50 58.0
Gohir.A10G061300 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.9e-06 55.8 59 45.8


User provided reference genes

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