Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.1e-181 638.3 310 100.0
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.7e-174 614.8 308 97.7
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.1e-173 613.2 308 97.7
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 2.8e-161 572.0 281 98.6
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 3.6e-153 545.0 281 92.5
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 2.6e-143 512.3 281 85.1
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 7.6e-143 510.8 281 86.5
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 1.5e-138 496.5 281 84.0
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 4.3e-138 495.0 281 82.2
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 1.6e-137 493.0 281 81.9
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 4.0e-136 488.4 281 80.8
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 8.9e-136 487.3 281 80.8
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 2.0e-135 486.1 281 81.1
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 2.0e-135 486.1 281 80.4
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 3.4e-135 485.3 281 80.8
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.7e-134 483.0 281 80.8
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 6.4e-134 481.1 281 78.6
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 8.4e-134 480.7 281 80.8
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.1e-133 480.3 281 81.9
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 5.4e-133 478.0 281 81.5
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 7.1e-133 477.6 281 78.6
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 1.2e-132 476.9 281 80.8
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.6e-132 476.5 281 80.1
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 2.7e-132 475.7 277 78.7
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 4.6e-132 474.9 277 79.1
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 4.6e-132 474.9 281 80.1
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 6.0e-132 474.6 281 78.3
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 7.8e-132 474.2 281 80.4
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.0e-131 473.8 281 79.7
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.0e-131 473.8 281 80.1
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.7e-131 473.0 281 78.6
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 2.3e-131 472.6 281 80.4
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 3.0e-131 472.2 275 79.3
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 3.9e-131 471.9 281 81.5
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 3.9e-131 471.9 281 79.7
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 6.6e-131 471.1 281 80.1
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 8.7e-131 470.7 277 79.1
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.9e-130 469.5 281 80.1
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.9e-130 469.5 281 77.6
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 2.5e-130 469.2 277 78.7
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 3.3e-130 468.8 281 79.0
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 1.3e-129 466.8 286 77.6
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.6e-129 466.5 281 75.1
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 2.8e-129 465.7 281 76.9
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.8e-129 465.7 281 79.7
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 2.8e-129 465.7 277 77.6
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 6.2e-129 464.5 281 76.5
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 8.1e-129 464.2 281 75.8
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 8.1e-129 464.2 281 75.8
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.1e-128 463.8 281 75.1
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 1.1e-128 463.8 281 78.3
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.4e-128 463.4 281 75.1
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.4e-128 463.4 281 75.1
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.4e-128 463.4 281 76.9
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.8e-128 463.0 281 75.1
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 2.4e-128 462.6 281 78.3
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 4.5e-127 458.4 279 76.0
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 7.6e-127 457.6 281 76.5
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 9.9e-127 457.2 281 74.4
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.9e-126 455.7 281 74.0
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 2.9e-126 455.7 281 74.0
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 2.9e-126 455.7 279 76.0
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 2.9e-126 455.7 281 75.4
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 3.8e-126 455.3 281 73.0
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 3.8e-126 455.3 281 76.9
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 3.8e-126 455.3 279 75.6
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 6.4e-126 454.5 283 77.4
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 4.2e-125 451.8 285 75.1
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 4.2e-125 451.8 281 72.6
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.2e-124 450.3 278 77.0
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.3e-123 446.8 274 77.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.3e-123 446.0 281 75.1
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 3.0e-123 445.7 281 73.3
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 1.1e-122 443.7 281 74.7
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.5e-122 443.4 281 72.6
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 2.5e-122 442.6 289 70.9
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 7.4e-122 441.0 281 71.5
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 1.4e-120 436.8 281 74.4
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.8e-120 436.4 271 76.8
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.8e-120 436.4 312 68.3
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 4.0e-120 435.3 308 68.8
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.2e-119 433.7 270 75.2
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.6e-119 432.6 281 73.0
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 9.9e-119 430.6 247 79.8
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 2.9e-118 429.1 281 74.0
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 6.4e-118 427.9 269 75.5
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.4e-117 426.0 281 71.9
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.4e-117 426.0 281 71.9
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 3.2e-117 425.6 281 69.8
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 7.1e-117 424.5 295 69.2
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.6e-116 423.3 263 76.8
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 7.9e-116 421.0 281 71.2
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.8e-115 419.9 270 73.7
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.1e-113 412.9 251 77.7
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.8e-112 409.8 279 68.1
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.2e-110 402.9 278 66.9
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.2e-110 402.9 278 66.9
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 6.0e-108 394.8 281 69.0
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.0e-107 394.0 282 63.8
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 3.0e-107 392.5 279 64.5
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 2.6e-103 379.4 236 75.4
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 1.7e-102 376.7 263 67.3
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 1.1e-101 374.0 260 66.5
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 5.3e-96 355.1 248 65.3
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.4e-93 347.1 419 46.5
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 2.5e-93 346.3 287 57.5
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.2e-93 345.9 190 82.6
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 6.1e-92 341.7 283 56.2
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 4.8e-89 332.0 281 58.0
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 5.9e-87 325.1 415 45.3
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 3.2e-85 319.3 266 60.2
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 3.3e-82 309.3 264 56.4
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.5e-77 293.9 167 78.4
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 9.4e-77 291.2 167 77.8
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.2e-76 290.8 280 50.0
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 3.6e-76 289.3 176 74.4
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 2.4e-72 276.6 145 83.4
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.1e-72 276.2 176 68.2
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 3.1e-72 276.2 306 47.4
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.0e-72 275.0 135 98.5
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 2.2e-70 270.0 296 47.6
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 6.5e-62 241.9 156 71.8
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 3.6e-60 236.1 249 49.8
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 1.8e-56 223.8 295 42.4
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 2.9e-54 216.5 143 73.4
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.2e-52 211.1 144 63.2
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 6.1e-52 208.8 248 46.4
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 1.2e-47 194.5 155 63.2
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 8.0e-44 181.8 223 41.7
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 5.4e-32 142.5 110 58.2
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.2e-31 141.4 71 88.7
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 6.0e-31 139.0 80 83.8
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.3e-30 137.1 127 58.3
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.6e-30 135.6 75 88.0
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 1.5e-29 134.4 92 75.0
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 2.1e-28 130.6 77 75.3
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 5.8e-26 122.5 73 69.9
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 5.8e-26 122.5 73 69.9
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.9e-22 109.8 80 65.0
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 7.8e-15 85.5 55 74.5
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-12 77.4 87 55.2
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 4.8e-12 76.3 93 45.2
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.4e-11 74.7 85 48.2
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.3e-06 58.2 170 26.5
FAN15G0877 Fragaria x ananassa HOM05D005341 ORTHO05D208515 2.3e-06 57.4 35 74.3
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 2.3e-06 57.4 126 31.7


User provided reference genes

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