Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1736.9 841 100.0
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1703.7 841 98.1
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1699.1 841 97.7
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1698.7 847 97.5
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1695.2 841 97.6
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1693.3 847 97.2
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1637.9 839 94.0
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1476.5 840 84.6
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1473.0 841 84.4
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1456.8 833 84.0
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1364.7 843 78.5
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1340.1 830 78.2
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1337.4 832 78.1
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1331.6 826 77.4
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1327.8 835 75.2
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1325.1 833 77.8
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1315.8 835 76.0
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1313.9 835 75.4
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1310.8 829 76.2
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1308.9 839 74.9
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1305.4 829 75.6
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1303.1 836 74.8
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1301.2 963 67.6
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1297.0 832 74.3
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1295.4 829 74.4
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1293.5 830 74.6
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1292.7 838 74.2
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1291.2 838 74.2
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1290.0 839 73.9
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1289.2 839 73.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1288.5 828 74.4
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1288.1 829 74.3
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1286.9 829 75.5
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1286.2 835 73.3
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1285.4 835 74.3
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1283.9 834 73.5
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1283.1 828 74.4
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1280.8 829 74.2
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1279.6 828 73.7
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1279.2 835 74.0
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1278.5 831 74.0
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1278.5 830 74.8
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1277.7 828 72.9
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1272.3 837 73.1
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1271.9 831 73.9
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1267.3 829 73.7
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1267.3 830 73.7
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1264.6 836 72.8
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1262.7 829 73.0
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1261.9 837 72.2
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1260.4 831 73.3
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1259.2 833 72.6
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1257.7 840 72.4
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1256.9 831 73.0
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1256.1 832 72.6
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1255.7 833 73.1
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1255.0 834 72.4
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1254.2 836 71.4
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1254.2 870 70.0
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1254.2 827 72.4
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1253.4 834 72.2
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1251.5 825 73.2
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1250.3 837 72.5
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1244.2 839 71.3
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1232.6 842 72.9
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1227.6 832 71.5
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1225.7 835 70.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1225.3 855 69.9
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1220.3 830 71.1
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1202.2 777 75.3
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1195.3 830 69.2
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1188.3 848 69.8
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1175.6 833 69.4
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1172.5 855 68.7
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1167.5 946 62.2
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1161.7 839 67.0
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1151.3 834 65.7
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1150.2 844 66.7
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1146.3 731 75.4
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1144.8 835 66.5
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1144.8 839 66.5
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1143.6 839 66.4
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1141.7 835 66.1
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1141.3 836 66.5
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1140.9 834 66.2
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1140.6 831 65.5
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1139.4 828 66.5
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1139.0 836 65.8
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1137.5 755 72.7
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1136.7 834 66.1
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1135.9 843 66.3
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1134.4 839 65.9
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1134.0 836 65.6
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1130.2 838 66.0
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1103.2 835 64.6
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1078.9 835 63.5
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.4e-305 1052.7 668 74.9
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.6e-299 1032.7 835 60.7
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 4.2e-281 971.5 648 72.4
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 2.9e-269 932.2 831 58.4
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-262 910.2 563 76.6
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 2.5e-249 865.9 891 50.2
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 4.7e-248 861.7 855 52.2
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 4.0e-247 858.6 864 50.3
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 3.5e-219 765.8 833 49.5
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 4.8e-176 622.5 464 64.9
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.2e-171 607.8 397 72.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 5.4e-151 539.3 400 66.5
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 4.0e-138 496.5 364 65.1
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 8.6e-133 478.8 354 63.3
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 4.0e-122 443.4 264 79.5
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.7e-118 430.6 303 73.6
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.3e-107 395.2 836 35.2
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 2.8e-107 394.0 859 33.1
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.9e-103 381.3 230 77.4
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 7.1e-103 379.4 496 46.4
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 5.6e-100 369.8 1180 26.4
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 3.8e-96 357.1 192 88.0
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 8.7e-93 345.9 274 60.6
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.9e-92 344.7 301 56.5
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.3e-92 343.6 195 79.0
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 7.7e-89 332.8 779 30.9
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.9e-87 328.2 202 77.2
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 2.0e-84 318.2 239 68.2
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 5.7e-68 263.5 589 33.6
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 8.3e-51 206.5 217 50.2
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.9e-47 195.3 158 58.9
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 7.5e-44 183.3 565 28.1
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 7.5e-44 183.3 565 28.1
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 4.7e-38 164.1 128 64.1
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 4.0e-37 161.0 99 73.7
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.8e-36 156.4 101 72.3
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 8.0e-30 136.7 78 79.5
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.8e-29 135.6 76 82.9
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 1.3e-27 129.4 97 66.0
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.7e-25 121.7 210 39.0
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 6.6e-24 117.1 69 78.3
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 4.0e-21 107.8 69 73.9
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.4e-20 104.8 62 69.4
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 6.4e-19 100.5 77 59.7
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 6.4e-19 100.5 120 44.2
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 1.9e-18 99.0 112 52.7
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 9.2e-18 96.7 53 79.2
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.5e-17 94.7 64 67.2
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 1.5e-15 89.4 111 48.6
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.2e-14 86.3 99 46.5
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 8.9e-13 80.1 86 52.3
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.7e-11 75.9 58 51.7
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 9.3e-10 70.1 103 37.9
PRCOL_00003955 Prasinoderma coloniale HOM05D017291 ORTHO05D017328 1.1e-07 63.2 252 25.4
Aqoxy4G00048 Aquilegia oxysepala HOM05D001610 ORTHO05D001585 3.3e-07 61.6 152 31.6
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 4.3e-07 61.2 174 28.7
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 2.1e-06 58.9 170 26.5
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 2.1e-06 58.9 31 90.3
COL.COLO4_29887 Corchorus olitorius HOM05D001610 ORTHO05D001585 2.8e-06 58.5 181 26.5
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 2.8e-06 58.5 118 29.7
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 8.1e-06 57.0 151 27.8
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 8.1e-06 57.0 118 28.8


User provided reference genes

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