Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.5e-279 963.4 470 100.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 5.5e-278 960.3 470 99.6
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.1e-277 958.4 470 99.4
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.1e-254 882.9 470 91.7
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.6e-251 871.7 468 90.0
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.2e-247 858.6 465 91.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 5.0e-223 777.7 465 80.0
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 5.0e-215 751.1 467 77.9
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.2e-208 729.9 465 74.6
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.1e-204 716.8 465 72.3
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.5e-203 713.0 463 74.1
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 4.4e-203 711.4 465 73.3
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 6.4e-202 707.6 467 72.6
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 8.3e-202 707.2 466 71.5
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.2e-200 703.4 465 73.3
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.7e-200 702.2 466 71.5
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 5.6e-198 694.5 463 71.5
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.1e-196 690.3 470 70.4
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.4e-196 689.9 467 70.0
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.0e-196 688.3 465 70.8
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.2e-195 686.8 465 72.7
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.4e-195 685.3 468 69.9
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 9.9e-195 683.7 465 69.5
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 9.9e-195 683.7 469 70.1
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 2.1e-192 676.0 486 67.3
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 2.7e-192 675.6 466 68.5
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 9.6e-190 667.2 465 69.0
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 6.2e-189 664.5 467 69.6
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 6.2e-189 664.5 467 67.9
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 7.6e-187 657.5 466 68.5
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.3e-186 656.8 467 68.1
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 3.8e-186 655.2 449 68.6
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.1e-185 653.7 437 70.7
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 4.6e-184 648.3 467 66.6
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 6.0e-184 647.9 469 66.7
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 6.0e-184 647.9 465 66.5
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.3e-183 646.0 465 66.2
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 2.3e-183 646.0 466 66.5
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 4.3e-182 641.7 466 66.5
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 4.3e-182 641.7 461 66.4
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 7.3e-182 641.0 459 65.8
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 9.6e-182 640.6 466 66.3
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.3e-181 640.2 414 74.4
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.3e-181 640.2 464 65.7
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.8e-181 639.0 475 65.5
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.2e-181 637.9 464 65.7
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 8.1e-181 637.5 469 64.2
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 2.4e-180 636.0 465 65.8
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 5.3e-180 634.8 463 64.4
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 2.0e-179 632.9 467 65.7
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 2.6e-179 632.5 467 64.9
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 2.6e-179 632.5 467 66.0
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.8e-179 631.3 460 64.6
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.3e-178 630.2 464 65.7
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.7e-178 629.8 467 65.3
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.2e-178 629.4 465 64.9
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.2e-178 629.4 459 64.7
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 3.8e-178 628.6 462 65.4
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 8.4e-178 627.5 463 64.8
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.4e-177 626.7 465 63.7
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.4e-177 625.9 465 65.2
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 5.4e-177 624.8 461 65.3
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 5.6e-174 614.8 461 65.1
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.8e-172 609.8 461 64.4
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.4e-172 609.4 463 64.8
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 9.0e-172 607.4 461 64.4
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 2.6e-171 605.9 460 63.3
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 2.6e-171 605.9 461 64.0
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-171 605.9 461 64.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 2.6e-171 605.9 438 66.0
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.4e-171 605.5 461 64.2
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 7.6e-171 604.4 460 62.6
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 2.2e-170 602.8 444 65.8
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.2e-170 602.8 459 63.8
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 3.8e-170 602.1 460 62.6
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 2.5e-169 599.4 459 62.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-169 599.0 460 62.4
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 4.2e-169 598.6 459 62.5
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 5.5e-169 598.2 459 62.1
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.5e-169 598.2 468 62.0
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.2e-168 597.0 458 62.9
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.7e-168 595.9 437 65.0
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 4.6e-168 595.1 459 62.3
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 6.0e-168 594.7 473 61.7
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 6.0e-168 594.7 419 67.8
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.3e-167 593.6 462 62.1
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 2.3e-167 592.8 463 62.6
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.0e-167 592.4 459 62.5
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.9e-166 589.7 454 64.3
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.1e-164 583.9 467 62.3
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.7e-162 576.6 490 61.8
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-161 573.5 442 62.4
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-159 566.2 431 62.4
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 5.1e-159 565.1 466 57.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-158 563.1 460 60.2
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.3e-158 562.0 459 60.6
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 4.3e-158 562.0 437 61.8
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 2.8e-157 559.3 466 57.9
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 8.2e-157 557.8 466 59.0
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.1e-156 557.4 468 59.6
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 7.7e-155 551.2 484 57.2
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 3.8e-154 548.9 437 62.5
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 8.5e-154 547.7 460 59.3
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 4.2e-153 545.4 433 61.4
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 5.5e-153 545.0 445 60.4
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 2.7e-152 542.7 436 60.1
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 6.7e-151 538.1 497 56.1
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-149 533.1 464 58.0
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.8e-149 532.7 469 56.5
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 3.7e-149 532.3 468 59.2
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.1e-148 530.8 469 55.0
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 9.1e-148 527.7 342 73.4
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 5.9e-147 525.0 458 54.4
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.7e-144 516.2 423 59.3
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 3.5e-139 499.2 388 62.4
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 3.6e-136 489.2 352 64.5
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 6.1e-136 488.4 446 56.7
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 9.1e-132 474.6 364 62.9
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 5.5e-129 465.3 433 55.0
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 5.2e-127 458.8 508 48.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.9e-122 443.0 501 47.7
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.8e-104 383.3 472 44.3
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 4.3e-89 332.8 458 40.6
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 4.0e-87 326.2 240 70.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 8.9e-87 325.1 432 41.0
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 7.6e-78 295.4 262 56.9
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 4.6e-75 286.2 196 74.0
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 7.8e-75 285.4 196 74.0
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.3e-73 280.0 189 68.8
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.4e-71 273.9 198 66.7
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.2e-69 267.3 225 58.7
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-61 240.4 222 57.7
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-58 231.5 219 56.2
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 2.8e-56 223.8 148 67.6
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-54 215.7 421 35.4
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 6.2e-48 196.1 315 39.4
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 3.0e-42 177.2 273 39.2
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.4e-39 168.3 110 67.3
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-38 164.9 178 52.2
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 2.5e-33 147.5 193 40.9
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.9e-31 139.4 115 59.1
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.5e-30 138.3 109 63.3
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-29 134.4 213 39.9
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 8.5e-29 132.5 83 73.5
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.5e-28 131.0 94 72.3
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 7.2e-28 129.4 132 50.8
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 4.7e-27 126.7 57 89.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-25 122.1 213 38.5
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 7.4e-25 119.4 144 45.8
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-24 117.5 144 45.1
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 2.4e-23 114.4 120 50.8
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 7.0e-23 112.8 90 61.1
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-22 111.7 76 64.5
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 3.5e-22 110.5 76 64.5
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 4.5e-22 110.2 117 51.3
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 6.5e-21 106.3 217 37.3
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 6.5e-21 106.3 80 58.8
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 3.2e-20 104.0 114 48.2
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.8e-18 98.2 103 52.4
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-18 97.8 63 68.3
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.5e-17 95.1 56 73.2
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.2e-16 89.4 56 69.6
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.4e-15 88.6 112 43.8
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.5e-13 79.3 186 29.0
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.1e-12 79.0 176 29.5
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-11 75.1 176 28.4
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 4.7e-11 73.6 53 66.0
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 5.2e-10 70.1 53 60.4
RcHm_v2.0_Chr2g0130381 Rosa chinensis HOM05D000321 ORTHO05D000204 2.0e-09 68.2 39 74.4
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 3.4e-09 67.4 40 75.0
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 4.8e-08 63.5 71 40.8
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-07 61.2 258 24.8
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 4.1e-07 60.5 57 56.1
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 5.4e-07 60.1 50 50.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.0e-06 58.2 170 26.5
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 3.5e-06 57.4 50 50.0
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-06 57.0 178 26.4
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 7.7e-06 56.2 42 54.8


User provided reference genes

Program Settings