Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.6e-141 506.1 265 100.0
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 2.1e-133 479.2 256 97.7
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.1e-133 479.2 256 97.7
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 6.1e-133 477.6 256 96.9
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.8e-124 449.5 287 85.4
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 7.0e-121 437.6 256 87.1
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 2.2e-119 432.6 256 86.3
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 8.8e-116 420.6 256 82.0
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 4.4e-115 418.3 256 81.6
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 4.8e-114 414.8 256 82.4
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.8e-113 412.9 256 81.6
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 4.1e-113 411.8 256 80.9
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 1.0e-111 407.1 256 79.3
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 1.3e-111 406.8 256 78.9
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 6.5e-111 404.4 256 80.1
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 8.5e-111 404.1 256 79.3
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 3.2e-110 402.1 256 78.5
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 3.2e-110 402.1 256 78.5
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 7.2e-110 401.0 256 78.1
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 1.2e-109 400.2 256 79.3
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 1.6e-109 399.8 256 78.1
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 3.6e-109 398.7 256 78.1
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 6.1e-109 397.9 256 78.1
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 8.0e-109 397.5 268 76.9
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 1.0e-108 397.1 257 77.0
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 1.4e-108 396.7 257 77.0
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.8e-108 396.4 256 76.6
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 8.8e-108 394.0 256 77.7
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 1.2e-107 393.7 256 76.2
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 1.2e-107 393.7 256 77.0
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 1.5e-107 393.3 256 77.3
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 4.4e-107 391.7 265 77.0
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 7.5e-107 391.0 256 77.0
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.7e-106 389.8 256 77.0
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 8.3e-106 387.5 256 76.6
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 8.3e-106 387.5 256 77.0
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.4e-105 386.7 256 76.2
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 1.4e-105 386.7 256 74.6
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 1.8e-105 386.3 256 75.4
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 2.4e-105 386.0 256 77.0
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 4.1e-105 385.2 256 75.0
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 1.6e-104 383.3 256 74.2
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 2.0e-104 382.9 256 75.8
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 5.9e-104 381.3 256 74.2
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.7e-103 379.8 256 75.8
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 2.2e-103 379.4 256 73.8
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 5.0e-103 378.3 256 74.2
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.1e-102 377.1 256 73.4
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 1.8e-100 369.8 256 71.1
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 3.0e-100 369.0 256 71.5
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 3.4e-99 365.5 256 70.7
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 9.8e-99 364.0 256 71.9
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 6.3e-98 361.3 256 69.9
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 1.8e-97 359.8 256 69.1
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 3.1e-97 359.0 241 75.1
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 4.1e-97 358.6 198 94.9
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 7.0e-97 357.8 256 69.9
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 1.2e-96 357.1 256 69.1
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.6e-96 356.7 241 73.0
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 1.6e-96 356.7 198 94.4
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 1.6e-96 356.7 256 68.8
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 2.0e-96 356.3 256 69.9
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 4.5e-96 355.1 256 69.5
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 7.7e-96 354.4 256 69.9
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 1.0e-95 354.0 256 69.9
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 1.0e-95 354.0 256 68.8
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.0e-95 354.0 256 68.8
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 2.3e-95 352.8 256 69.5
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 5.0e-95 351.7 256 69.5
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 8.6e-95 350.9 256 69.5
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.1e-94 350.5 256 69.5
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.9e-94 349.7 251 70.9
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 2.5e-94 349.4 256 69.1
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 2.5e-94 349.4 256 69.1
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 2.5e-94 349.4 256 69.1
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 9.5e-94 347.4 256 66.8
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.2e-93 347.1 259 68.0
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 1.6e-93 346.7 256 66.4
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.1e-93 346.3 256 66.4
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 5.2e-92 341.7 221 77.8
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 1.2e-91 340.5 256 68.0
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 2.0e-91 339.7 256 68.0
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 7.5e-91 337.8 230 72.2
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 9.8e-91 337.4 290 61.0
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.7e-90 336.7 224 74.6
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.2e-90 336.3 255 63.9
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 2.8e-90 335.9 256 65.6
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 1.4e-89 333.6 256 67.2
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.4e-89 333.6 246 70.7
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 3.1e-89 332.4 217 75.1
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 7.0e-89 331.3 217 74.7
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 1.7e-87 326.6 256 68.4
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 1.8e-84 316.6 213 74.6
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 2.0e-83 313.2 219 70.8
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 2.0e-83 313.2 187 89.3
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 5.6e-78 295.0 254 57.1
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.2e-77 293.9 251 57.8
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 4.7e-77 292.0 188 77.7
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 5.8e-75 285.0 217 65.9
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 5.1e-71 271.9 255 54.1
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 3.6e-69 265.8 200 68.0
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 8.1e-69 264.6 255 57.6
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.1e-68 264.2 254 52.8
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 5.2e-68 261.9 256 53.5
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 8.9e-68 261.2 199 71.4
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.6e-67 259.6 223 60.5
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 2.3e-63 246.5 159 79.2
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.4e-60 236.5 199 63.8
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 6.8e-60 235.0 237 54.4
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 1.7e-58 230.3 199 59.3
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 8.4e-58 228.0 164 70.1
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 9.6e-46 188.0 138 66.7
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 3.6e-45 186.0 259 40.2
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 1.2e-35 154.5 240 39.2
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 2.9e-34 149.8 226 36.7
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 7.1e-33 145.2 238 41.6
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 2.3e-31 140.2 224 45.1
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.1e-29 133.7 99 65.7
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 8.2e-29 131.7 120 57.5
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 3.2e-25 119.8 210 40.0
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 5.5e-25 119.0 81 76.5
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.6e-24 117.5 81 74.1
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 4.8e-13 79.3 62 61.3
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 6.1e-08 62.4 46 69.6
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 3.3e-06 56.6 59 50.8


User provided reference genes

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