Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.0e-125 451.1 218 100.0
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.8e-107 392.1 306 69.3
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 7.3e-68 261.2 216 65.7
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.3e-68 261.2 216 65.7
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-60 235.7 218 58.7
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-60 235.7 218 58.7
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-60 235.7 218 58.7
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 2.1e-59 233.0 218 57.8
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.8e-59 232.6 219 59.4
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.8e-57 224.9 215 57.2
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.9e-57 224.2 215 57.2
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.3e-56 223.8 215 57.2
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 7.9e-54 214.5 225 51.1
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 3.0e-53 212.6 216 52.8
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 9.0e-50 201.1 203 53.2
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.0e-50 201.1 209 53.1
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.0e-50 201.1 203 53.2
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-49 200.3 212 51.4
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 1.1e-47 194.1 199 52.3
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-47 193.4 216 50.5
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 2.5e-47 193.0 215 49.3
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 5.5e-47 191.8 199 51.3
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.9e-44 183.3 200 49.5
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.9e-44 183.3 214 49.1
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 4.3e-44 182.2 201 47.3
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 4.3e-44 182.2 201 48.8
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 4.3e-44 182.2 216 45.4
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 2.8e-43 179.5 201 48.8
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 8.2e-43 177.9 217 48.8
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.1e-42 177.6 207 46.9
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 5.3e-42 175.3 205 46.3
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 5.3e-42 175.3 203 47.8
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 9.0e-42 174.5 205 46.3
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 9.0e-42 174.5 202 48.0
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 2.0e-41 173.3 210 44.8
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 2.6e-41 172.9 212 46.2
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.6e-41 172.9 221 45.2
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 7.6e-41 171.4 198 46.5
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 7.6e-41 171.4 202 46.0
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.7e-40 170.2 99 79.8
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.7e-40 170.2 200 45.5
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 3.8e-40 169.1 209 43.5
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.8e-40 169.1 209 43.5
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 5.0e-40 168.7 211 43.1
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.5e-40 167.9 209 43.1
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 1.4e-39 167.2 207 44.0
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.9e-39 166.8 200 45.5
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 3.2e-39 166.0 207 44.0
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.2e-39 165.6 214 44.9
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.5e-39 165.2 200 46.5
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 9.3e-39 164.5 208 44.7
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.2e-38 164.1 200 45.0
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.6e-38 163.7 208 44.7
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.6e-38 163.7 200 44.5
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.6e-38 163.7 213 43.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.1e-38 163.3 205 43.9
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.1e-38 163.3 205 43.9
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 2.1e-38 163.3 209 45.5
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.7e-38 162.9 203 43.3
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 3.6e-38 162.5 199 44.2
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.6e-38 162.5 209 44.0
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 3.6e-38 162.5 209 44.0
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 4.6e-38 162.2 201 46.3
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 4.6e-38 162.2 217 42.9
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 7.9e-38 161.4 200 44.0
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 7.9e-38 161.4 202 45.5
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 7.9e-38 161.4 199 43.7
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 7.9e-38 161.4 209 44.0
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.0e-37 161.0 203 42.9
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.3e-37 160.6 209 43.5
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.3e-37 160.6 195 43.1
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.3e-37 160.6 216 42.6
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 2.3e-37 159.8 217 42.4
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.0e-37 159.5 209 43.5
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 3.0e-37 159.5 218 45.9
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 5.1e-37 158.7 199 44.2
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.1e-37 158.7 199 42.7
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 8.7e-37 157.9 202 42.6
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 8.7e-37 157.9 202 42.6
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 8.7e-37 157.9 209 43.1
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.5e-36 157.1 207 42.0
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.9e-36 156.8 196 42.9
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.9e-36 156.8 218 45.4
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.3e-36 156.0 207 42.0
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.3e-36 156.0 207 42.0
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 4.3e-36 155.6 200 45.5
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 9.7e-36 154.5 192 44.3
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 9.7e-36 154.5 192 43.8
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 9.7e-36 154.5 204 43.1
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-35 153.7 212 46.2
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.8e-35 152.9 199 41.2
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 2.8e-35 152.9 200 42.0
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 3.7e-35 152.5 201 42.8
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.8e-35 152.1 200 43.5
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 6.3e-35 151.8 201 42.3
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 6.3e-35 151.8 210 41.9
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 8.2e-35 151.4 204 41.7
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.4e-34 150.6 203 42.9
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.8e-34 150.2 199 43.2
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.8e-34 150.2 217 41.5
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.8e-34 150.2 201 44.3
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.4e-34 149.8 199 42.7
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.4e-34 149.8 199 42.7
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 4.1e-34 149.1 199 42.2
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.1e-34 149.1 201 43.3
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.3e-34 148.7 199 41.7
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 6.9e-34 148.3 201 41.3
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.2e-33 147.5 201 40.8
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 1.2e-33 147.5 201 43.3
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.2e-33 147.5 201 43.8
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.5e-33 147.1 192 41.1
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.0e-33 146.7 208 41.3
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 3.4e-33 146.0 102 66.7
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.0e-32 144.4 201 39.8
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.0e-32 144.4 219 39.7
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 5.0e-32 142.1 221 39.8
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 5.0e-32 142.1 204 41.2
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.5e-32 141.7 204 38.7
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.5e-32 141.7 204 38.7
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 1.4e-31 140.6 200 40.0
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.4e-31 140.6 199 41.2
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.9e-31 140.2 204 40.2
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 7.2e-31 138.3 201 38.3
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 9.4e-31 137.9 196 38.3
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 9.4e-31 137.9 212 43.4
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 2.7e-30 136.3 201 36.8
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 2.7e-30 136.3 201 36.8
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 3.6e-30 136.0 213 37.1
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 3.6e-30 136.0 203 40.4
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.4e-29 134.0 196 38.8
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.8e-29 133.7 107 65.4
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.8e-29 133.7 208 38.0
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 3.9e-29 132.5 202 38.6
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 5.1e-29 132.1 204 34.3
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.5e-28 130.6 199 39.2
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 2.6e-28 129.8 201 35.3
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 5.7e-28 128.6 203 36.9
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 7.4e-28 128.3 78 83.3
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 9.7e-28 127.9 203 38.4
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 3.7e-27 125.9 212 35.8
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 4.8e-27 125.6 97 62.9
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 6.3e-27 125.2 200 38.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.1e-26 124.4 201 35.8
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 1.4e-26 124.0 201 38.8
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.8e-26 123.6 201 34.3
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 6.9e-26 121.7 199 36.2
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 5.9e-25 118.6 104 57.7
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 5.9e-25 118.6 201 35.8
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.9e-24 116.3 86 59.3
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 1.1e-23 114.4 194 38.7
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 5.5e-23 112.1 105 47.6
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.6e-22 110.5 93 57.0
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 5.7e-20 102.1 85 58.8
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.7e-19 100.5 102 53.9
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 2.4e-18 96.7 72 63.9
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-17 94.0 68 69.1
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.0e-17 93.6 99 53.5
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 2.6e-17 93.2 54 75.9
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.5e-15 87.4 69 55.1
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 9.4e-15 84.7 104 44.2
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 1.4e-13 80.9 51 70.6
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 3.0e-13 79.7 51 72.5
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 3.0e-13 79.7 66 59.1
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 8.8e-13 78.2 100 43.0
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.4e-10 70.9 103 41.7
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 2.0e-09 67.0 141 33.3
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 2.7e-09 66.6 65 52.3
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 3.8e-08 62.8 47 66.0
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.1e-07 61.2 31 74.2


User provided reference genes

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