Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 1.8e-38 162.2 86 100.0
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 2.3e-33 145.2 91 90.1
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 2.3e-33 145.2 91 90.1
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 5.7e-24 114.0 93 75.3
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 6.8e-17 90.5 81 59.3
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 4.8e-15 84.3 77 58.4
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 5.9e-13 77.4 73 60.3
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 2.3e-12 75.5 67 62.7
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 2.9e-12 75.1 50 76.0
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 2.9e-12 75.1 73 58.9
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 3.8e-12 74.7 81 54.3
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 6.6e-12 73.9 69 60.9
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 6.6e-12 73.9 69 60.9
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 8.6e-12 73.6 67 59.7
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 1.5e-11 72.8 57 63.2
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 1.9e-11 72.4 81 51.9
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 2.5e-11 72.0 82 53.7
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 2.5e-11 72.0 78 53.8
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 2.5e-11 72.0 71 56.3
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 4.2e-11 71.2 61 60.7
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 4.2e-11 71.2 85 48.2
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 9.5e-11 70.1 82 47.6
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 9.5e-11 70.1 82 52.4
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 1.6e-10 69.3 72 52.8
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 1.6e-10 69.3 48 70.8
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 2.1e-10 68.9 65 55.4
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 3.6e-10 68.2 77 53.2
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 4.7e-10 67.8 72 51.4
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 4.7e-10 67.8 72 51.4
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 4.7e-10 67.8 82 48.8
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 4.7e-10 67.8 51 64.7
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 8.0e-10 67.0 73 52.1
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 8.0e-10 67.0 74 54.1
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 8.0e-10 67.0 58 56.9
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 1.0e-09 66.6 73 52.1
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 1.0e-09 66.6 80 51.2
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 1.4e-09 66.2 62 56.5
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 1.8e-09 65.9 76 52.6
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 1.8e-09 65.9 72 50.0
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 1.8e-09 65.9 72 50.0
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 1.8e-09 65.9 75 54.7
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 1.8e-09 65.9 76 50.0
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 2.3e-09 65.5 76 51.3
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 3.0e-09 65.1 82 48.8
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 3.0e-09 65.1 51 66.7
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 4.0e-09 64.7 57 57.9
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 4.0e-09 64.7 75 53.3
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 4.0e-09 64.7 53 62.3
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 4.0e-09 64.7 75 46.7
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 5.2e-09 64.3 75 50.7
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 5.2e-09 64.3 54 61.1
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 5.2e-09 64.3 81 43.2
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 8.9e-09 63.5 66 54.5
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 8.9e-09 63.5 48 64.6
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 8.9e-09 63.5 75 50.7
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 8.9e-09 63.5 66 50.0
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.2e-08 63.2 73 50.7
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 2.0e-08 62.4 82 46.3
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 2.0e-08 62.4 51 58.8
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 2.6e-08 62.0 45 68.9
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 4.4e-08 61.2 71 49.3
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 7.5e-08 60.5 65 50.8
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 1.7e-07 59.3 65 49.2
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 1.7e-07 59.3 79 49.4
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 2.2e-07 58.9 52 57.7
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 2.8e-07 58.5 67 52.2
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 3.7e-07 58.2 48 58.3
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 3.7e-07 58.2 78 47.4
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 4.9e-07 57.8 46 63.0
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 4.9e-07 57.8 46 63.0
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 4.9e-07 57.8 46 63.0
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 6.3e-07 57.4 66 51.5
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 1.1e-06 56.6 66 47.0
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 1.1e-06 56.6 74 47.3
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 1.1e-06 56.6 76 46.1
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 1.1e-06 56.6 67 46.3
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 4.1e-06 54.7 57 50.9
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 4.1e-06 54.7 55 49.1
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 5.4e-06 54.3 48 56.2
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 9.2e-06 53.5 70 38.6


User provided reference genes

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