Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.0e-155 550.4 289 100.0
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 2.2e-152 542.3 286 99.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 9.5e-148 526.9 299 93.6
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 8.9e-146 520.4 284 94.7
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.4e-135 486.5 273 94.5
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.9e-135 486.1 273 94.5
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 6.8e-130 467.6 289 83.0
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 4.9e-120 434.9 259 84.6
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 3.5e-118 428.7 291 77.7
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 9.6e-116 420.6 289 73.0
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.4e-114 416.0 287 75.6
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.5e-113 413.3 288 73.6
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 4.5e-113 411.8 289 72.7
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.7e-112 409.8 287 72.1
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.9e-112 409.1 287 71.8
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 2.9e-112 409.1 283 73.1
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 4.9e-112 408.3 289 72.7
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 4.9e-112 408.3 286 72.7
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 6.4e-112 407.9 290 73.4
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 6.4e-112 407.9 289 72.0
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.1e-111 407.1 287 72.1
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.9e-111 406.4 290 73.4
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.2e-111 405.6 287 73.5
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.1e-110 402.9 287 72.1
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.1e-110 402.9 290 72.8
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 2.7e-110 402.5 290 72.8
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 6.0e-110 401.4 283 73.5
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 7.9e-110 401.0 283 71.4
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.0e-109 400.6 287 71.8
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.3e-109 400.2 290 71.4
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.3e-109 400.2 287 71.8
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.3e-109 400.2 283 72.8
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.8e-109 399.8 287 73.2
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 6.7e-109 397.9 287 74.9
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 4.3e-108 395.2 283 71.0
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 4.3e-108 395.2 283 71.7
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 5.6e-108 394.8 286 71.3
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.3e-107 393.7 287 70.7
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.3e-107 393.7 287 70.7
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 2.1e-107 392.9 290 71.0
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.8e-107 392.5 289 69.9
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 3.7e-107 392.1 283 71.0
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 4.8e-107 391.7 283 70.7
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.1e-106 390.6 289 70.6
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.1e-106 390.6 283 71.0
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.8e-106 389.8 290 70.7
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.4e-106 389.4 286 70.3
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 4.0e-106 388.7 287 71.1
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 4.0e-106 388.7 289 68.9
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.4e-105 385.6 290 69.3
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 5.8e-105 384.8 286 68.9
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.8e-105 384.8 288 70.1
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 7.6e-105 384.4 290 70.7
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.2e-104 382.9 280 72.9
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 2.9e-104 382.5 282 69.9
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.1e-103 380.6 283 69.3
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.4e-103 380.2 285 70.2
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.4e-103 380.2 281 70.5
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.9e-103 379.8 283 69.6
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.6e-102 376.7 283 68.2
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 3.9e-101 372.1 292 66.8
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 5.1e-101 371.7 244 77.0
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.5e-100 370.2 290 67.6
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.5e-100 370.2 293 67.2
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.9e-100 369.8 286 70.3
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-100 369.8 286 70.3
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.9e-100 369.8 286 70.3
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 4.3e-100 368.6 297 65.0
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.3e-99 367.1 292 66.4
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 2.1e-99 366.3 284 65.5
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 4.8e-99 365.2 324 62.7
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 6.2e-99 364.8 279 70.6
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.2e-99 364.4 293 65.9
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.4e-98 362.8 295 67.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 5.3e-98 361.7 279 70.6
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 5.3e-98 361.7 290 66.6
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 6.9e-98 361.3 288 66.7
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.5e-97 360.1 287 68.3
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 2.6e-97 359.4 268 69.0
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 4.5e-97 358.6 229 76.4
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.3e-96 357.1 295 66.8
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.3e-96 357.1 286 67.8
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.3e-96 357.1 286 67.8
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.3e-96 357.1 286 67.8
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.7e-96 356.7 295 65.8
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.7e-96 356.7 229 76.4
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.7e-96 356.7 230 77.4
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.9e-96 355.9 265 68.3
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 4.9e-96 355.1 216 81.5
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 4.9e-96 355.1 229 76.9
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 4.9e-96 355.1 290 65.5
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 6.5e-96 354.8 286 66.8
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.5e-96 354.8 279 68.5
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.4e-95 353.6 284 66.9
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 3.2e-95 352.4 278 69.1
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 4.2e-95 352.1 286 66.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 5.5e-95 351.7 279 67.4
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 7.1e-95 351.3 279 67.4
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 7.1e-95 351.3 283 66.1
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 2.1e-94 349.7 278 68.7
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 2.7e-94 349.4 278 68.3
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 6.0e-94 348.2 295 64.4
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 3.0e-93 345.9 246 74.8
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.5e-92 343.6 296 64.5
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 8.2e-91 337.8 286 63.3
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 6.9e-90 334.7 289 63.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.0e-88 330.9 246 69.9
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.7e-88 330.1 243 68.3
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 8.5e-88 327.8 289 61.9
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.6e-86 322.4 252 67.5
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 4.3e-84 315.5 219 75.3
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 4.3e-84 315.5 283 61.8
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.7e-83 313.5 229 69.0
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.1e-82 310.8 229 68.1
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 4.1e-82 308.9 229 67.7
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 5.3e-82 308.5 298 57.7
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 3.3e-76 289.3 235 63.8
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.7e-75 287.0 227 62.1
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.4e-74 283.9 293 50.2
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.8e-69 266.9 233 57.1
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.3e-67 260.8 285 49.1
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.4e-66 257.3 271 50.9
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 2.3e-61 240.0 265 52.8
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.6e-60 236.5 218 61.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.9e-57 225.3 197 53.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.2e-56 223.4 197 53.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.8e-56 222.6 155 70.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.5e-56 221.9 197 52.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-55 220.7 197 52.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.1e-54 215.3 139 75.5
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.4e-52 209.1 219 56.2
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.3e-51 204.9 232 53.0
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.6e-46 189.5 197 47.2
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 6.1e-46 188.7 266 45.9
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.1e-46 188.7 137 69.3
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.5e-41 172.6 171 56.1
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-38 164.5 186 47.3
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.4e-34 151.0 119 67.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 5.6e-31 139.0 84 83.3
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-29 134.0 183 39.9
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 7.5e-28 128.6 77 83.1
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-26 124.8 199 35.7
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.9e-26 124.0 206 41.7
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.2e-26 123.2 215 42.8
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 4.6e-25 119.4 190 38.9
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 6.6e-24 115.5 99 62.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 6.6e-24 115.5 99 62.6
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 2.8e-22 110.2 217 32.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.8e-17 92.0 59 76.3
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.3e-16 90.5 91 48.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.5e-15 87.8 62 69.4
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.9e-15 87.4 62 69.4
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.3e-15 85.5 62 67.7
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-12 77.0 58 63.8
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.4e-12 76.3 64 64.1
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 3.2e-10 70.1 51 62.7
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 6.6e-08 62.4 60 55.0
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 6.6e-08 62.4 60 55.0
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 4.3e-07 59.7 61 50.8
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 2.1e-06 57.4 90 41.1
PSO063G3446 Papaver somniferum HOM05D004334 ORTHO05D004763 2.1e-06 57.4 51 54.9
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 2.8e-06 57.0 44 61.4


User provided reference genes

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