Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 0.0e+00 1103.6 673 100.0
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.0e-299 1030.0 683 87.3
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.2e-295 1016.5 683 88.1
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.1e-290 1001.5 685 87.9
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 5.2e-290 1000.7 682 88.0
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.2e-241 840.1 695 77.4
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 9.2e-186 654.4 693 60.0
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 3.3e-183 646.0 700 57.1
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 9.5e-183 644.4 701 57.1
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 4.6e-129 466.1 686 43.7
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.3e-128 464.5 701 43.2
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 9.7e-127 458.4 686 44.0
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.4e-124 449.9 687 43.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.9e-123 446.8 686 43.1
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 8.5e-123 445.3 691 42.8
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.9e-122 444.1 747 40.8
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 4.2e-122 443.0 701 42.7
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 4.2e-122 443.0 689 42.4
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.2e-121 441.4 719 42.1
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 4.3e-119 433.0 693 42.1
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 5.7e-119 432.6 688 43.3
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 5.7e-119 432.6 706 47.2
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 9.1e-117 425.2 686 41.5
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.6e-116 423.7 694 42.4
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.3e-115 421.4 713 41.0
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 7.2e-114 415.6 716 40.1
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.1e-111 408.3 701 41.2
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.5e-111 407.9 679 41.5
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 2.0e-111 407.5 687 40.6
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 9.7e-111 405.2 738 38.9
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 4.8e-110 402.9 697 41.8
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.4e-109 401.4 704 41.3
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 4.1e-109 399.8 710 39.3
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 6.5e-107 392.5 675 42.2
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.9e-106 391.0 563 44.8
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 2.5e-106 390.6 708 44.1
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.4e-106 388.7 705 39.9
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 3.7e-102 376.7 774 36.4
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.1e-101 373.2 717 39.2
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 5.3e-101 372.9 715 38.3
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.1e-97 360.9 689 38.8
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.4e-96 358.2 732 35.4
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.4e-96 358.2 632 39.4
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.4e-93 348.2 734 37.1
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 5.4e-93 346.3 743 35.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 5.9e-92 342.8 686 37.9
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 5.0e-91 339.7 708 38.8
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.5e-90 338.2 735 39.5
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 2.5e-90 337.4 722 36.6
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 3.2e-90 337.0 688 36.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-89 335.1 703 35.7
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.2e-89 335.1 684 35.8
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 2.1e-89 334.3 701 36.2
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 4.7e-89 333.2 699 36.3
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.0e-88 332.0 718 35.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.8e-88 331.3 731 36.9
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.9e-86 323.2 740 35.5
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.1e-85 322.0 738 34.1
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 3.1e-85 320.5 697 38.0
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 4.1e-85 320.1 781 33.8
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 7.0e-85 319.3 689 35.6
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.7e-84 317.4 693 38.5
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 2.9e-83 313.9 720 34.9
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.6e-83 312.4 744 34.1
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.1e-82 312.0 701 37.9
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 3.6e-81 307.0 696 38.1
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 6.1e-81 306.2 690 34.6
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 6.1e-81 306.2 563 38.4
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.0e-80 305.4 779 34.3
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.4e-80 305.1 688 34.6
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.3e-80 304.3 573 43.3
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 3.0e-80 303.9 689 34.3
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 4.0e-80 303.5 700 34.3
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 8.9e-80 302.4 689 36.1
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.5e-79 301.6 703 36.4
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 3.4e-79 300.4 745 34.5
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 5.7e-79 299.7 704 36.6
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 2.2e-78 297.7 688 34.2
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.9e-78 297.4 737 36.0
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.1e-77 295.4 690 34.1
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.4e-77 295.0 786 32.2
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.4e-77 295.0 690 33.6
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.6e-76 291.6 713 33.4
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 3.5e-76 290.4 693 37.5
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.0e-75 288.9 686 35.4
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 4.3e-74 283.5 844 31.0
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 5.6e-74 283.1 689 33.1
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 2.8e-73 280.8 826 30.3
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.3e-72 277.7 722 33.8
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.2e-70 271.2 778 31.1
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-69 268.9 711 33.5
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 3.2e-69 267.3 862 31.1
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 1.6e-68 265.0 687 32.2
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-68 265.0 685 35.6
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.7e-67 261.5 751 32.8
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 8.6e-67 259.2 717 33.1
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 3.3e-66 257.3 550 36.5
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 9.5e-66 255.8 651 34.9
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 4.7e-65 253.4 865 30.4
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 6.2e-65 253.1 842 33.5
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 3.1e-64 250.8 706 32.0
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.2e-63 248.8 427 40.0
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 9.8e-63 245.7 765 33.1
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 7.1e-61 239.6 774 28.7
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 6.0e-60 236.5 892 29.1
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.9e-59 233.8 558 35.5
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 5.1e-59 233.4 543 35.4
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.6e-57 228.4 685 31.7
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.0e-55 221.5 538 35.7
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 3.4e-55 220.7 663 30.9
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 6.4e-54 216.5 910 27.4
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 7.1e-53 213.0 570 31.2
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 6.6e-51 206.5 650 33.5
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 6.2e-49 199.9 650 30.9
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 5.8e-47 193.4 723 28.9
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.3e-46 192.2 659 31.3
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 6.4e-46 189.9 726 28.5
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 3.3e-42 177.6 441 33.1
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.8e-40 171.8 554 31.9
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.2e-39 169.1 733 26.6
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.8e-38 164.1 171 53.8
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.1e-37 162.5 318 39.9
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 4.6e-36 157.1 303 38.6
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.6e-36 157.1 869 25.1
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.0e-35 156.0 309 37.9
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.8e-35 155.2 482 30.9
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 3.9e-35 154.1 304 39.1
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 1.1e-34 152.5 313 37.1
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.9e-34 151.8 690 26.4
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.2e-33 146.7 526 33.1
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 5.3e-32 143.7 445 30.3
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 5.8e-31 140.2 463 29.8
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.3e-30 139.0 173 49.1
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.7e-30 138.7 236 39.0
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 3.2e-29 134.4 179 46.4
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 7.1e-29 133.3 158 44.3
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.8e-25 121.3 186 41.4
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.4e-24 119.0 268 31.7
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.5e-23 115.5 708 24.7
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 4.5e-23 114.0 131 46.6
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 5.8e-23 113.6 333 32.4
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.0e-22 112.8 381 33.3
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 2.2e-22 111.7 380 32.9
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.6e-20 105.5 377 32.4
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 8.7e-19 99.8 303 29.4
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.1e-18 99.4 189 39.2
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 4.8e-17 94.0 714 22.8
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 8.2e-17 93.2 83 51.8
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.1e-16 92.8 133 41.4
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 4.1e-16 90.9 643 25.5
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 6.9e-16 90.1 89 57.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.6e-15 88.2 62 66.1
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.2e-14 85.1 102 45.1
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 2.9e-14 84.7 78 51.3
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.2e-13 81.3 171 32.7
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 5.5e-13 80.5 59 57.6
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.3e-13 79.7 169 33.7
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.6e-12 79.0 111 49.5
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 7.9e-12 76.6 382 25.4
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 3.9e-11 74.3 642 24.3
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 8.7e-11 73.2 90 43.3
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.7e-11 73.2 546 22.2
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 2.5e-10 71.6 85 43.5
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 4.8e-09 67.4 79 53.2
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 7.7e-07 60.1 226 30.5
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 2.2e-06 58.5 284 26.4
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 8.5e-06 56.6 103 36.9


User provided reference genes

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