Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1557.3 777 100.0
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1484.9 776 96.1
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1462.6 840 89.6
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1439.1 847 87.5
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1427.2 775 92.8
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1319.3 776 84.8
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1264.2 778 81.4
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1261.5 776 80.7
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1256.9 776 80.4
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1234.2 776 79.4
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1233.0 778 79.6
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1232.6 776 79.0
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1229.2 775 78.7
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1228.0 803 76.7
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1224.5 775 79.1
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1224.2 778 78.3
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1223.8 778 79.0
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1223.4 776 78.5
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1222.6 789 77.4
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1219.9 776 78.0
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1219.9 775 78.3
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1217.2 776 78.5
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1213.7 775 78.8
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1213.7 775 78.8
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1211.4 775 77.7
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1210.7 776 77.6
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1210.7 777 77.3
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1209.5 775 78.6
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1206.8 763 78.9
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1205.3 778 77.1
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1204.9 776 76.7
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1204.5 776 77.6
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1204.5 777 77.5
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1200.3 776 77.3
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1199.9 777 77.6
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1199.5 777 76.7
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1198.7 776 77.1
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1198.0 776 77.2
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1197.6 777 77.0
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1197.2 776 77.2
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1194.9 776 78.0
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1194.5 776 76.4
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1194.5 777 77.2
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1194.5 776 76.4
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1192.9 776 76.5
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1192.9 776 76.9
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1192.9 777 77.3
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1192.2 761 77.9
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1192.2 777 76.2
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1191.8 776 76.2
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1191.8 775 77.4
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1191.8 776 75.5
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1190.3 776 76.2
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1187.6 804 74.8
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1187.6 776 76.4
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1186.0 776 75.5
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1186.0 776 76.4
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1186.0 776 75.1
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1185.6 777 75.3
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1185.2 777 76.3
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1185.2 779 76.3
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1185.2 775 76.3
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1184.9 776 75.9
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1184.9 776 77.3
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1183.7 775 77.0
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1182.9 767 77.6
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1182.2 777 75.8
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1182.2 775 76.0
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1181.8 774 76.2
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1180.2 774 76.1
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1179.9 847 71.9
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1178.3 782 75.7
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1177.5 774 76.1
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1176.8 808 74.4
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1175.2 778 75.2
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1174.5 771 76.1
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1168.7 777 75.5
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1162.5 781 74.0
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1162.1 777 75.0
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1161.7 782 75.3
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1159.8 773 76.2
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1156.7 799 72.7
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1156.0 776 75.1
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1150.6 851 69.7
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1148.3 905 66.7
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1134.0 805 72.0
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1129.4 776 73.6
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1125.9 739 75.1
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1108.2 721 75.9
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1103.6 780 72.1
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1092.0 751 73.6
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1078.9 780 71.4
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1078.9 796 68.7
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1077.4 777 69.5
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 5.3e-312 1074.7 708 75.1
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 1.9e-307 1058.9 654 79.7
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 3.3e-304 1048.1 777 69.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 5.6e-304 1047.3 761 68.7
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 3.5e-298 1028.1 686 74.1
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 7.9e-298 1026.9 782 65.6
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 4.9e-292 1007.7 790 65.3
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 5.6e-288 994.2 786 64.4
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 9.6e-288 993.4 751 68.3
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 1.4e-283 979.5 777 64.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 9.3e-283 976.9 782 64.1
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 5.7e-264 914.4 591 77.8
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.6e-240 835.9 653 67.2
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 6.3e-239 831.2 786 59.0
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 2.4e-230 802.7 553 72.5
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.2e-213 747.3 524 72.1
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 3.4e-184 649.4 343 90.1
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 2.7e-128 463.8 282 85.5
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 7.2e-126 455.7 256 84.4
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-123 448.4 296 77.0
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 5.6e-102 376.3 309 62.8
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 7.8e-96 355.9 227 81.1
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 8.6e-95 352.4 194 86.1
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.7e-82 311.6 181 81.8
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 9.3e-81 305.8 345 50.1
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 5.6e-70 270.0 275 55.3
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 3.4e-67 260.8 182 73.1
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.3e-53 215.7 138 77.5
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 2.4e-44 184.9 118 78.8
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.9e-34 151.4 94 78.7
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 6.5e-34 150.2 83 83.1
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 4.4e-30 137.5 133 55.6
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 2.2e-29 135.2 82 81.7
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 5.3e-28 130.6 103 56.3
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.0e-23 114.4 76 71.1
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 9.7e-22 109.8 65 76.9
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 3.1e-20 104.8 67 76.1
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 2.3e-15 88.6 68 63.2
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 4.8e-13 80.9 105 48.6
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-11 76.3 41 92.7
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 7.2e-09 67.0 42 78.6


User provided reference genes

Program Settings