Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 6.4e-97 357.5 185 100.0
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.6e-92 341.7 185 95.7
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 2.3e-91 339.0 188 92.0
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 5.2e-91 337.8 189 92.6
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.6e-87 326.2 187 90.4
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 5.2e-83 311.2 185 86.5
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 2.2e-33 146.4 189 52.9
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 1.5e-29 133.7 196 50.5
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 3.5e-26 122.5 188 49.5
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 3.2e-24 115.9 161 54.0
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 2.8e-20 102.8 158 43.0
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 4.8e-20 102.1 118 54.2
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 4.1e-19 99.0 168 48.2
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 5.3e-19 98.6 168 43.5
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 7.0e-19 98.2 124 47.6
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 2.0e-18 96.7 168 48.2
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 3.5e-18 95.9 169 40.2
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 4.5e-18 95.5 156 46.2
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 1.0e-17 94.4 130 47.7
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 1.3e-17 94.0 124 50.8
Glyma.02G035400 Glycine max HOM05D007558 ORTHO05D009245 1.7e-17 93.6 168 45.2
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 1.7e-17 93.6 121 52.1
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 2.9e-17 92.8 171 41.5
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 2.9e-17 92.8 125 51.2
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 6.5e-17 91.7 122 51.6
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 8.5e-17 91.3 124 51.6
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 1.1e-16 90.9 178 41.0
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 1.9e-16 90.1 112 50.9
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 2.5e-16 89.7 111 52.3
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 2.5e-16 89.7 121 48.8
Glyma.01G030000 Glycine max HOM05D007558 ORTHO05D009245 2.5e-16 89.7 168 45.2
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 3.2e-16 89.4 131 46.6
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 3.2e-16 89.4 156 41.7
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 4.2e-16 89.0 114 47.4
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 9.4e-16 87.8 132 42.4
ECA233G1669 Erigeron canadensis HOM05D007558 ORTHO05D009245 9.4e-16 87.8 104 51.9
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.6e-15 87.0 112 49.1
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 2.1e-15 86.7 112 49.1
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 2.7e-15 86.3 159 40.3
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.6e-15 85.9 112 49.1
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 3.6e-15 85.9 112 49.1
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 8.0e-15 84.7 109 49.5
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 8.0e-15 84.7 109 49.5
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 8.0e-15 84.7 109 49.5
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 8.0e-15 84.7 122 49.2
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 1.4e-14 84.0 95 62.1
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 3.0e-14 82.8 125 47.2
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 8.8e-14 81.3 155 38.7
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.2e-13 80.9 101 52.5
Aqoxy3G02932 Aquilegia oxysepala HOM05D007558 ORTHO05D009245 1.5e-13 80.5 132 40.2
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 2.6e-13 79.7 112 50.0
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 2.6e-13 79.7 149 40.9
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 4.4e-13 79.0 126 42.1
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 4.4e-13 79.0 129 47.3
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 7.5e-13 78.2 123 40.7
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 7.5e-13 78.2 65 64.6
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 9.8e-13 77.8 142 42.3
DCAR_026537 Daucus carota HOM05D007558 ORTHO05D009245 2.2e-12 76.6 127 44.9
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 2.2e-12 76.6 122 45.9
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 2.8e-12 76.3 70 60.0
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 6.3e-12 75.1 135 40.7
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 8.3e-12 74.7 135 44.4
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 1.1e-11 74.3 151 37.1
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 1.4e-11 73.9 139 41.7
Atru.chr11.2043 Acer truncatum HOM05D007558 ORTHO05D009245 1.8e-11 73.6 117 43.6
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 3.1e-11 72.8 120 44.2
DCAR_007085 Daucus carota HOM05D007558 ORTHO05D009245 3.1e-11 72.8 106 46.2
VMungo0251G2708 Vigna mungo HOM05D007558 ORTHO05D009245 3.1e-11 72.8 103 41.7
A02p16540 Brassica napus HOM05D008527 ORTHO05D010701 4.1e-11 72.4 130 39.2
BraA02t06712Z Brassica rapa HOM05D008527 ORTHO05D010701 4.1e-11 72.4 130 39.2
Carub.0002s1715 Capsella rubella HOM05D008527 ORTHO05D010701 4.1e-11 72.4 138 39.1
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 4.1e-11 72.4 94 52.1
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 4.1e-11 72.4 138 42.8
BolC2t08819H Brassica oleracea HOM05D008527 ORTHO05D010701 5.4e-11 72.0 130 39.2
MSTRG.2398 Avicennia marina HOM05D007558 ORTHO05D009245 7.0e-11 71.6 108 47.2
Lsat_1_v5_gn_4_5541 Lactuca sativa HOM05D007558 ORTHO05D009245 9.1e-11 71.2 103 44.7
ECA234G1002 Erigeron canadensis HOM05D007558 ORTHO05D009245 1.2e-10 70.9 117 41.9
Lalb_Chr16g0382221 Lupinus albus HOM05D007558 ORTHO05D009245 1.2e-10 70.9 162 37.7
PGSC0003DMG400027920 Solanum tuberosum HOM05D007558 ORTHO05D009245 1.2e-10 70.9 135 37.8
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 5.9e-10 68.6 118 41.5
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 5.9e-10 68.6 114 43.0
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 7.7e-10 68.2 119 41.2
Migut.E00166 Erythranthe guttata HOM05D007558 ORTHO05D009245 1.3e-09 67.4 105 43.8
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 2.3e-09 66.6 120 40.8
Sopen04g014760 Solanum pennellii HOM05D007558 ORTHO05D009245 3.8e-09 65.9 110 40.0
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 8.6e-09 64.7 124 42.7
AL1G37290 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 1.5e-08 63.9 127 40.2
unitig_8.g3152 Utricularia gibba HOM05D007558 ORTHO05D009245 1.5e-08 63.9 107 37.4
SalBow2G1747 Salvia bowleyana HOM05D007558 ORTHO05D009245 1.9e-08 63.5 103 45.6
Sed0023819 Sechium edule HOM05D007558 ORTHO05D009245 1.9e-08 63.5 89 49.4
MBI16_g27096_MAGBIO Magnolia biondii HOM05D007558 ORTHO05D009245 3.2e-08 62.8 132 35.6
Solyc04g026250.1 Solanum lycopersicum HOM05D007558 ORTHO05D009245 3.2e-08 62.8 110 40.0
Manes.13G029400 Manihot esculenta HOM05D007558 ORTHO05D009245 4.2e-08 62.4 76 48.7
Sc11g0001140 Simmondsia chinensis HOM05D007558 ORTHO05D009245 4.2e-08 62.4 172 32.6
BcaB07g32343 Brassica carinata HOM05D008527 ORTHO05D010701 5.5e-08 62.0 174 33.9
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 7.2e-08 61.6 140 40.7
AUR62014050 Chenopodium quinoa HOM05D023191 ORTHO05D009245 7.2e-08 61.6 96 39.6
Sp5g25540 Schrenkiella parvula HOM05D008527 ORTHO05D010701 7.2e-08 61.6 94 41.5
unitig_22.g6434 Utricularia gibba HOM05D007558 ORTHO05D009245 9.5e-08 61.2 127 37.8
BcaC03g15190 Brassica carinata HOM05D008527 ORTHO05D010701 1.2e-07 60.8 96 40.6
Nitab4.5_0000034g0280 Nicotiana tabacum HOM05D007558 ORTHO05D009245 1.2e-07 60.8 84 42.9
C02p27710 Brassica napus HOM05D008527 ORTHO05D010701 2.8e-07 59.7 94 40.4
Eucgr.B03316 Eucalyptus grandis HOM05D007558 ORTHO05D009245 4.7e-07 58.9 116 43.1
Nitab4.5_0005678g0020 Nicotiana tabacum HOM05D020724 ORTHO05D025910 1.0e-06 57.8 140 37.9
Ah.02g129970 Amaranthus hybridus HOM05D023191 ORTHO05D009245 1.4e-06 57.4 81 42.0
BcaC08g46489 Brassica carinata HOM05D008527 ORTHO05D010701 1.4e-06 57.4 93 37.6
C06p44320 Brassica napus HOM05D008527 ORTHO05D010701 1.4e-06 57.4 93 37.6
BolC6t39502H Brassica oleracea HOM05D008527 ORTHO05D010701 1.4e-06 57.4 93 37.6
Ah.03g132750 Amaranthus hybridus HOM05D023191 ORTHO05D009245 3.0e-06 56.2 59 54.2
Nitab4.5_0000203g0180 Nicotiana tabacum HOM05D020724 ORTHO05D025910 3.0e-06 56.2 142 38.0
SalBow8G4409 Salvia bowleyana HOM05D007558 ORTHO05D009245 4.0e-06 55.8 123 35.8
Migut.L01422 Erythranthe guttata HOM05D007558 ORTHO05D009245 5.2e-06 55.5 70 47.1
BcaB05g24574 Brassica carinata HOM05D008527 ORTHO05D010701 6.8e-06 55.1 84 39.3
BcaB05g24577 Brassica carinata HOM05D008527 ORTHO05D010701 6.8e-06 55.1 84 39.3
AUR62005388 Chenopodium quinoa HOM05D023191 ORTHO05D009245 6.8e-06 55.1 189 30.7


User provided reference genes

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