Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.6e-239 831.2 437 100.0
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 7.3e-184 647.5 437 83.1
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 1.9e-147 526.6 334 88.6
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.2e-147 525.8 344 79.4
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 1.4e-126 457.2 335 80.9
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 6.0e-69 265.8 386 51.3
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.3e-68 263.8 333 55.9
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 8.1e-58 228.8 361 49.9
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 5.4e-54 216.1 390 46.7
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 7.1e-54 215.7 396 43.9
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 7.3e-51 205.7 384 44.8
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 8.1e-50 202.2 324 50.6
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 5.3e-49 199.5 203 52.2
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 9.0e-49 198.7 343 45.5
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 1.2e-48 198.4 403 42.2
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 9.9e-48 195.3 340 45.9
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.3e-47 194.9 336 47.0
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 1.3e-47 194.9 403 41.7
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 2.9e-47 193.7 246 55.3
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 8.4e-47 192.2 350 46.3
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.6e-45 188.0 300 48.0
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 2.7e-45 187.2 319 48.6
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 4.6e-45 186.4 336 48.2
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 7.9e-45 185.7 395 35.9
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 5.1e-44 183.0 347 44.1
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 5.6e-43 179.5 386 39.1
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 1.6e-42 177.9 310 45.2
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.1e-41 175.3 346 43.4
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 3.1e-41 173.7 296 47.6
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 5.3e-41 172.9 308 43.8
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 2.6e-40 170.6 366 43.2
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 2.6e-40 170.6 376 41.2
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 4.9e-39 166.4 313 45.4
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 8.4e-39 165.6 311 47.9
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 1.4e-38 164.9 332 43.1
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 4.2e-38 163.3 306 45.1
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 5.5e-38 162.9 308 46.1
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.6e-37 161.4 322 45.7
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.6e-37 161.4 305 46.2
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.6e-37 161.4 310 44.5
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 6.0e-37 159.5 335 45.7
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 6.0e-37 159.5 310 44.2
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.0e-36 158.7 284 48.6
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.0e-36 158.7 302 44.7
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.3e-36 158.3 305 46.6
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 2.3e-36 157.5 338 41.7
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 3.9e-36 156.8 336 43.2
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 5.1e-36 156.4 327 44.6
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 6.7e-36 156.0 351 42.5
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 6.7e-36 156.0 344 42.7
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-35 155.2 387 34.1
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.5e-35 154.8 342 40.6
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 3.3e-35 153.7 300 44.3
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 4.3e-35 153.3 333 44.4
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 9.6e-35 152.1 351 42.7
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.6e-34 151.4 311 44.1
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 2.1e-34 151.0 220 53.6
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 3.7e-34 150.2 304 43.8
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 5.3e-33 146.4 316 43.4
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 5.3e-33 146.4 344 40.4
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.0e-32 144.4 349 35.5
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.6e-32 144.1 338 42.3
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.7e-31 141.4 339 40.1
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.8e-31 140.2 359 32.9
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 4.9e-31 139.8 242 47.5
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 6.5e-31 139.4 258 46.5
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 8.4e-31 139.0 366 30.9
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 1.1e-30 138.7 326 41.7
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 2.5e-30 137.5 385 29.1
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 2.5e-30 137.5 391 28.9
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.1e-29 134.4 303 44.6
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 2.7e-29 134.0 368 29.3
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 5.1e-28 129.8 381 27.6
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 6.7e-28 129.4 226 48.2
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 6.7e-28 129.4 393 27.7
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 1.1e-27 128.6 306 39.9
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 1.1e-27 128.6 294 41.8
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 3.3e-27 127.1 297 41.8
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 3.3e-27 127.1 337 30.6
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 4.3e-27 126.7 335 38.8
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 7.4e-27 125.9 308 40.6
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 1.3e-26 125.2 197 40.1
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.3e-26 125.2 309 29.8
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 4.8e-26 123.2 386 27.5
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 1.8e-25 121.3 199 37.2
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 3.1e-25 120.6 297 36.4
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 9.0e-25 119.0 345 31.6
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.0e-23 115.5 342 36.0
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 1.0e-23 115.5 349 39.0
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 1.3e-23 115.2 170 41.2
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 1.7e-23 114.8 319 37.6
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 3.8e-23 113.6 323 32.2
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 5.5e-22 109.8 300 38.3
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 7.2e-22 109.4 299 31.4
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 2.1e-21 107.8 151 41.1
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 6.1e-21 106.3 343 35.3
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 1.8e-20 104.8 312 38.5
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 3.9e-20 103.6 151 40.4
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.5e-19 101.7 184 40.2
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.7e-18 97.1 135 38.5
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 1.1e-17 95.5 304 31.6
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 1.4e-17 95.1 277 38.6
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 4.1e-17 93.6 207 44.4
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 4.1e-17 93.6 185 35.1
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.6e-16 90.9 258 42.2
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 5.9e-16 89.7 197 33.0
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 5.5e-14 83.2 148 40.5
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 9.4e-14 82.4 172 37.2
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 2.7e-13 80.9 173 39.3
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 3.6e-13 80.5 175 32.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 7.9e-13 79.3 224 31.2
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 7.9e-13 79.3 174 35.1
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.8e-12 78.2 161 34.8
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 2.3e-12 77.8 181 34.3
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.0e-12 77.4 151 37.1
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 5.1e-12 76.6 161 37.3
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 6.7e-12 76.3 166 36.7
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.1e-11 75.5 185 36.2
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 1.5e-11 75.1 104 37.5
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 1.5e-11 75.1 104 37.5
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 2.0e-11 74.7 104 37.5
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 4.3e-11 73.6 104 37.5
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 4.3e-11 73.6 104 37.5
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 7.4e-11 72.8 157 35.0
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 9.7e-11 72.4 113 34.5
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 1.3e-10 72.0 104 36.5
Sp7g30100 Schrenkiella parvula HOM05D001903 ORTHO05D001847 3.7e-10 70.5 104 35.6
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 6.3e-10 69.7 199 33.2
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 8.2e-10 69.3 161 32.3
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.1e-09 68.9 168 33.3
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 1.8e-09 68.2 118 32.2
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 3.1e-09 67.4 106 31.1
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 4.1e-09 67.0 115 33.9
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 4.1e-09 67.0 118 31.4
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 5.3e-09 66.6 106 34.9
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 9.1e-09 65.9 206 25.7
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 9.1e-09 65.9 58 56.9
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 1.2e-08 65.5 117 31.6
Actinidia14059 Actinidia chinensis HOM05D001903 ORTHO05D001847 2.0e-08 64.7 63 42.9
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.6e-08 64.3 86 43.0
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 3.4e-08 63.9 115 35.7
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.5e-08 63.5 45 57.8
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 4.5e-08 63.5 168 34.5
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 4.5e-08 63.5 181 33.7
COL.COLO4_18856 Corchorus olitorius HOM05D001903 ORTHO05D001847 5.9e-08 63.2 57 49.1
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 1.0e-07 62.4 106 35.8
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 1.3e-07 62.0 46 56.5
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 1.3e-07 62.0 77 41.6
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 1.7e-07 61.6 74 43.2
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 1.7e-07 61.6 44 59.1
BcaB05g25297 Brassica carinata HOM05D001903 ORTHO05D001847 2.2e-07 61.2 104 33.7
Eucgr.C02775 Eucalyptus grandis HOM05D001903 ORTHO05D001847 2.2e-07 61.2 112 31.2
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.9e-07 60.8 111 38.7
CSS0008588 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 3.8e-07 60.5 110 30.0
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 3.8e-07 60.5 61 44.3
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 5.0e-07 60.1 104 33.7
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 6.5e-07 59.7 90 43.3
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 8.5e-07 59.3 74 45.9
Cpa.g.sc10.261 Carica papaya HOM05D001903 ORTHO05D001847 1.4e-06 58.5 106 32.1
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 1.4e-06 58.5 72 40.3
CAN.G1503.5 Capsicum annuum HOM05D001903 ORTHO05D001847 1.9e-06 58.2 60 43.3
AUR62016344 Chenopodium quinoa HOM05D001903 ORTHO05D001847 1.9e-06 58.2 58 44.8
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 2.5e-06 57.8 76 38.2
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.5e-06 56.6 83 67.5
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 5.5e-06 56.6 157 34.4
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 9.4e-06 55.8 179 31.3


User provided reference genes

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