Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 0.0e+00 1173.7 568 100.0
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 6.6e-294 1013.4 569 88.0
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 5.6e-293 1010.4 569 87.7
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 4.2e-256 887.9 465 91.8
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 7.6e-250 867.1 569 75.0
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 7.2e-232 807.4 465 82.4
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 5.1e-230 801.2 490 78.4
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 4.2e-208 728.4 567 62.4
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 3.7e-204 715.3 563 62.5
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 4.8e-204 714.9 562 61.4
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 7.2e-200 701.0 461 70.3
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 4.0e-198 695.3 567 60.5
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 4.0e-198 695.3 566 60.1
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 5.2e-198 694.9 563 60.2
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 1.5e-197 693.3 548 62.2
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 2.2e-196 689.5 563 60.0
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 2.8e-196 689.1 566 60.4
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 1.1e-195 687.2 468 69.0
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 1.1e-195 687.2 564 60.1
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 5.4e-195 684.9 564 60.6
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 1.6e-194 683.3 465 68.8
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.3e-193 680.2 538 61.5
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.8e-193 678.7 538 61.5
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 3.8e-193 678.7 466 68.2
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 9.5e-192 674.1 552 60.3
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 4.7e-191 671.8 467 69.2
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 6.8e-190 667.9 562 57.7
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 1.5e-189 666.8 463 69.3
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 9.8e-189 664.1 465 66.0
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 2.8e-188 662.5 564 57.4
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 4.9e-188 661.8 568 58.3
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 1.4e-187 660.2 538 60.0
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 4.1e-187 658.7 465 67.7
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.2e-186 657.1 465 67.1
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 1.6e-186 656.8 465 66.7
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 5.9e-186 654.8 568 58.1
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 1.7e-185 653.3 461 65.1
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 5.0e-185 651.7 479 64.9
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 5.0e-185 651.7 466 67.6
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 5.6e-184 648.3 468 65.6
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 2.3e-182 642.9 464 63.8
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 6.8e-182 641.3 464 64.0
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.6e-181 639.4 565 55.8
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 9.8e-181 637.5 567 55.9
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.9e-180 636.0 464 63.6
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 3.2e-179 632.5 568 56.7
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 4.1e-179 632.1 567 56.3
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.2e-178 630.6 568 56.5
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 8.6e-177 624.4 563 55.1
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 2.5e-176 622.9 566 54.4
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 4.3e-176 622.1 569 56.6
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 2.1e-175 619.8 541 56.0
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 4.7e-175 618.6 493 59.8
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 4.7e-175 618.6 493 59.8
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 3.1e-174 615.9 562 54.4
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 2.0e-173 613.2 423 66.9
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 1.7e-172 610.1 557 53.3
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 4.9e-172 608.6 587 54.0
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.4e-171 607.1 562 53.9
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 5.4e-171 605.1 639 51.5
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 7.8e-170 601.3 468 62.6
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 6.6e-169 598.2 560 55.0
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 8.6e-169 597.8 568 52.6
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 2.5e-168 596.3 466 61.2
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 4.3e-168 595.5 561 53.3
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 7.3e-168 594.7 467 62.1
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 7.3e-168 594.7 592 53.0
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 6.2e-167 591.7 459 62.1
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.2e-165 587.4 297 94.9
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.7e-164 583.6 563 51.3
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 4.9e-164 582.0 563 51.7
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 6.4e-164 581.6 562 52.3
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 6.4e-164 581.6 562 52.3
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 9.2e-163 577.8 563 52.2
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 2.7e-162 576.2 562 51.8
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 2.7e-162 576.2 557 52.6
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 4.6e-162 575.5 562 52.0
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.3e-161 573.9 564 52.1
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 4.3e-160 568.9 463 60.3
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 4.3e-160 568.9 553 52.1
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 9.5e-160 567.8 560 50.5
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 9.5e-160 567.8 461 59.9
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 3.6e-159 565.8 565 51.9
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.7e-159 565.5 461 58.6
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.5e-157 560.5 675 45.6
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.5e-157 560.5 569 51.1
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.1e-155 554.3 559 53.1
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 5.6e-152 542.0 465 56.6
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.5e-149 533.9 535 49.0
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 7.1e-147 525.0 588 45.4
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 2.4e-142 510.0 424 58.5
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 2.6e-141 506.5 473 52.2
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.3e-140 504.2 436 55.0
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 2.2e-140 503.4 459 56.0
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 4.9e-124 449.1 330 63.3
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 1.3e-119 434.5 300 69.0
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.0e-113 414.8 357 56.6
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 1.1e-112 411.4 287 72.5
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 7.4e-112 408.7 287 72.1
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 2.7e-106 390.2 266 73.7
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 4.5e-101 372.9 352 53.1
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 3.8e-100 369.8 480 39.6
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 4.1e-94 349.7 479 39.0
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 1.2e-90 338.2 478 40.4
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 8.0e-90 335.5 553 36.7
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 5.5e-83 312.8 343 50.4
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 9.8e-80 302.0 220 64.1
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.8e-73 281.2 280 46.8
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 3.9e-68 263.5 314 46.2
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 6.8e-65 252.7 201 60.7
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 7.5e-56 222.6 367 35.1
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 3.5e-45 187.2 190 53.7
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 6.4e-39 166.4 85 89.4
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 3.9e-36 157.1 351 32.5
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 2.7e-29 134.4 98 65.3
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 4.3e-27 127.1 75 78.7
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 7.3e-27 126.3 92 63.0
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 6.0e-21 106.7 112 47.3
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 4.9e-15 87.0 100 47.0
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-14 85.9 53 71.7
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.5e-14 83.6 53 71.7
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.5e-13 80.9 53 71.7
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 4.6e-13 80.5 40 90.0
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.9e-13 79.7 53 66.0
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.9e-13 79.7 53 66.0
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.8e-12 78.6 58 58.6
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 8.7e-12 76.3 72 54.2
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.1e-09 67.8 123 35.0
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 1.3e-07 62.4 242 24.8
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 3.2e-06 57.8 59 54.2
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 5.5e-06 57.0 53 56.6
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 9.3e-06 56.2 53 52.8


User provided reference genes

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