Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.3e-55 219.5 114 100.0
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.0e-52 209.9 114 96.5
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 1.5e-51 206.1 114 94.7
FAN17G0917 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.6e-45 184.5 103 93.2
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 7.3e-43 177.2 113 86.7
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 6.2e-42 174.1 103 93.2
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 1.3e-20 103.2 106 56.6
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 1.2e-16 90.1 117 51.3
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 5.8e-16 87.8 110 54.5
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 9.9e-16 87.0 104 51.0
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.7e-15 86.3 118 47.5
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 1.7e-15 86.3 124 46.0
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.2e-14 82.0 106 50.0
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 5.4e-14 81.3 102 51.0
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 9.3e-14 80.5 103 52.4
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 1.2e-13 80.1 111 53.2
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 2.7e-13 79.0 107 50.5
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.8e-12 76.3 101 48.5
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 1.8e-12 76.3 75 56.0
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 2.3e-12 75.9 111 45.9
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 2.3e-12 75.9 77 58.4
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 3.9e-12 75.1 116 42.2
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 3.9e-12 75.1 53 67.9
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 8.7e-12 73.9 116 41.4
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.1e-11 73.6 106 44.3
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 2.5e-11 72.4 66 57.6
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.5e-11 72.4 115 44.3
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 3.3e-11 72.0 63 60.3
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 3.3e-11 72.0 103 46.6
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 3.3e-11 72.0 111 47.7
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.3e-11 71.6 102 47.1
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 4.3e-11 71.6 104 47.1
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 7.4e-11 70.9 119 45.4
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 9.6e-11 70.5 71 54.9
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-10 70.1 104 43.3
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 2.1e-10 69.3 118 42.4
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 4.8e-10 68.2 33 93.9
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 4.8e-10 68.2 119 43.7
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 6.2e-10 67.8 114 40.4
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 6.2e-10 67.8 114 45.6
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 8.1e-10 67.4 105 45.7
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 8.1e-10 67.4 102 45.1
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 8.1e-10 67.4 59 55.9
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 8.1e-10 67.4 109 46.8
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.1e-09 67.0 106 45.3
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 1.1e-09 67.0 67 55.2
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 1.1e-09 67.0 104 42.3
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 1.1e-09 67.0 77 49.4
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.8e-09 66.2 106 40.6
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.4e-09 65.9 102 44.1
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 3.1e-09 65.5 63 54.0
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 3.1e-09 65.5 107 43.9
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 3.1e-09 65.5 107 43.9
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 6.9e-09 64.3 44 65.9
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 9.0e-09 63.9 107 43.0
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 9.0e-09 63.9 91 44.0
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 1.2e-08 63.5 107 42.1
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 1.2e-08 63.5 54 59.3
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 1.5e-08 63.2 115 42.6
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 3.4e-08 62.0 38 78.9
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.4e-08 62.0 51 54.9
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 3.4e-08 62.0 98 46.9
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 4.5e-08 61.6 111 41.4
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 5.8e-08 61.2 103 39.8
Sed0010056 Sechium edule HOM05D031204 ORTHO05D004401 7.6e-08 60.8 112 39.3
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 7.6e-08 60.8 37 73.0
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 7.6e-08 60.8 37 73.0
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.2e-07 59.3 68 51.5
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 2.2e-07 59.3 99 40.4
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 2.9e-07 58.9 89 40.4
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 2.9e-07 58.9 35 77.1
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 3.8e-07 58.5 45 62.2
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 3.8e-07 58.5 106 38.7
Solyc01g011105.1 Solanum lycopersicum HOM05D004965 ORTHO05D004401 3.8e-07 58.5 45 62.2
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 3.8e-07 58.5 49 61.2
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 4.9e-07 58.2 32 81.2
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 6.4e-07 57.8 53 58.5
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 6.4e-07 57.8 113 39.8
ClCG05G024840 Citrullus lanatus HOM05D031204 ORTHO05D004401 1.4e-06 56.6 115 41.7
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 1.4e-06 56.6 43 58.1
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 1.4e-06 56.6 45 57.8
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 1.9e-06 56.2 63 50.8
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.9e-06 56.2 91 38.5
PSO591G0153 Papaver somniferum HOM05D044922 ORTHO05D050178 1.9e-06 56.2 110 40.9
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 2.4e-06 55.8 102 37.3
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.4e-06 55.8 106 40.6
CDE04G1822 Ceratophyllum demersum HOM05D004965 ORTHO05D004401 4.2e-06 55.1 51 54.9
MELO3C012043.2 Cucumis melo HOM05D031204 ORTHO05D004401 4.2e-06 55.1 116 37.9
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 5.5e-06 54.7 104 41.3
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 5.5e-06 54.7 105 35.2
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 5.5e-06 54.7 37 67.6
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 5.5e-06 54.7 65 47.7
AL2G29210 Arabidopsis lyrata HOM05D010176 ORTHO05D012455 7.1e-06 54.3 111 36.0
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 7.1e-06 54.3 102 34.3
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 7.1e-06 54.3 34 73.5
CsaV3_5G032070 Cucumis sativus L. HOM05D031204 ORTHO05D004401 9.3e-06 53.9 115 37.4


User provided reference genes

Program Settings