Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.1e-239 830.9 387 100.0
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.9e-232 807.4 387 97.2
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 9.0e-210 733.4 390 89.5
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 7.1e-207 723.8 396 87.6
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 3.2e-199 698.4 387 85.8
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 9.3e-175 617.1 390 74.1
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.9e-168 595.5 390 72.3
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 2.3e-157 559.3 384 69.0
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.0e-152 543.9 385 65.7
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.4e-149 533.5 385 64.2
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.3e-149 532.7 384 63.8
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.3e-147 526.9 384 65.4
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.8e-147 525.8 385 63.9
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 8.2e-147 524.2 387 65.1
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 2.4e-146 522.7 384 64.3
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 7.7e-145 517.7 384 63.8
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.7e-144 516.5 384 63.0
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 2.9e-144 515.8 373 64.1
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.5e-143 513.5 384 61.7
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 1.9e-143 513.1 384 60.4
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 4.7e-142 508.4 384 61.2
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 4.7e-142 508.4 413 58.4
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 5.2e-141 505.0 382 60.7
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.2e-140 503.8 410 59.0
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 2.2e-139 499.6 385 61.0
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 4.8e-139 498.4 381 59.8
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 6.3e-139 498.0 384 59.4
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 8.3e-139 497.7 384 59.1
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.8e-138 496.5 388 60.3
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.8e-138 496.5 385 61.3
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.8e-138 496.5 385 61.3
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 2.4e-138 496.1 388 60.3
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 4.1e-138 495.4 394 61.7
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.6e-137 493.4 243 94.7
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 7.7e-137 491.1 385 60.8
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.7e-136 490.0 388 57.7
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 3.8e-136 488.8 384 59.6
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 5.0e-136 488.4 384 58.9
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.5e-135 486.9 382 60.5
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.5e-135 486.9 385 61.0
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.9e-135 486.5 385 59.7
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 3.3e-135 485.7 382 58.9
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 4.2e-135 485.3 384 58.9
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 9.5e-135 484.2 387 58.9
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 9.5e-135 484.2 384 58.3
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 1.6e-134 483.4 406 58.4
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 3.6e-134 482.3 385 60.0
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 4.7e-134 481.9 382 60.2
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 8.0e-134 481.1 407 57.5
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.0e-133 480.7 401 57.6
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 4.0e-133 478.8 381 58.5
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.5e-132 476.9 384 57.6
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 2.0e-132 476.5 388 60.3
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 2.0e-132 476.5 387 57.9
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 2.0e-132 476.5 387 57.9
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 3.4e-132 475.7 384 58.1
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.1e-130 470.7 382 58.4
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.4e-130 470.3 474 50.2
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 2.4e-130 469.5 355 63.7
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 9.2e-130 467.6 353 64.6
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.9e-128 462.6 384 57.0
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.6e-126 456.8 388 56.4
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 5.2e-125 451.8 367 57.5
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 6.8e-125 451.4 384 55.2
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.8e-125 451.4 385 56.4
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.2e-124 450.7 387 57.1
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 3.4e-124 449.1 386 55.7
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.2e-123 446.4 381 54.1
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 2.9e-123 446.0 384 55.7
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 3.7e-123 445.7 427 50.8
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.9e-122 443.4 348 58.9
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.2e-121 440.7 381 55.6
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.6e-121 440.3 355 59.2
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 7.8e-121 438.0 389 54.0
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.3e-120 437.2 368 56.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.6e-118 429.1 385 55.1
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 2.6e-116 422.9 381 50.9
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 3.7e-115 419.1 394 53.0
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 8.3e-115 417.9 384 52.9
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 4.3e-111 405.6 310 62.6
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 2.9e-107 392.9 329 59.9
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 2.4e-106 389.8 316 58.5
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 9.2e-106 387.9 390 49.7
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 9.2e-106 387.9 341 54.0
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.6e-105 387.1 358 52.5
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 8.9e-101 371.3 281 62.6
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 7.1e-98 361.7 383 47.8
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.0e-96 357.8 292 57.2
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 3.6e-94 349.4 394 46.7
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 9.0e-93 344.7 383 44.1
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.5e-92 344.0 401 44.6
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 8.1e-86 321.6 311 50.2
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.4e-85 320.9 404 42.1
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 2.1e-81 307.0 381 42.5
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.9e-79 300.4 276 52.2
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 2.8e-78 296.6 384 39.1
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 5.1e-72 275.8 214 57.5
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.8e-70 270.0 383 37.6
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.7e-70 269.6 357 39.8
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.8e-69 267.3 315 45.7
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 2.0e-39 167.5 314 32.2
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 8.2e-38 162.2 376 30.6
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 9.1e-37 158.7 378 31.2
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.2e-36 158.3 378 30.4
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.0e-35 155.2 118 64.4
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.3e-35 154.8 179 50.8
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.9e-35 153.7 374 29.9
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.9e-35 153.7 379 30.3
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.9e-34 151.0 379 30.1
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 2.5e-34 150.6 352 32.1
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 2.5e-34 150.6 377 29.4
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 5.5e-34 149.4 373 31.6
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 5.5e-34 149.4 374 30.5
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 7.2e-34 149.1 376 30.1
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 7.2e-34 149.1 376 30.9
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.6e-33 147.9 376 29.5
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 2.7e-33 147.1 373 29.8
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 4.7e-33 146.4 373 29.8
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 6.1e-33 146.0 370 28.4
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 6.1e-33 146.0 376 29.3
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 6.1e-33 146.0 376 29.3
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.0e-32 145.2 378 27.5
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.0e-32 145.2 373 30.6
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.4e-32 144.8 374 28.1
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.4e-32 144.8 375 29.9
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.4e-32 144.8 375 30.1
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.4e-32 144.8 378 29.9
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 2.3e-32 144.1 376 29.3
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 2.3e-32 144.1 382 29.6
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 3.0e-32 143.7 378 29.9
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 5.2e-32 142.9 376 29.0
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 5.2e-32 142.9 382 30.1
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 6.8e-32 142.5 376 29.3
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 6.8e-32 142.5 376 29.3
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 6.8e-32 142.5 374 29.1
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 6.8e-32 142.5 382 27.7
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 8.8e-32 142.1 373 28.7
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 8.8e-32 142.1 378 30.4
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.2e-31 141.7 377 30.0
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 1.2e-31 141.7 92 75.0
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 1.2e-31 141.7 378 29.4
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 2.0e-31 141.0 376 29.5
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 2.6e-31 140.6 364 30.2
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 2.6e-31 140.6 382 29.1
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 4.4e-31 139.8 370 27.8
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 4.4e-31 139.8 372 29.8
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 5.7e-31 139.4 131 49.6
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 5.7e-31 139.4 373 30.3
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.3e-30 138.3 372 27.4
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.2e-30 137.5 376 29.0
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 3.7e-30 136.7 382 28.8
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 6.3e-30 136.0 370 27.8
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 6.3e-30 136.0 370 27.8
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 6.3e-30 136.0 371 28.0
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 6.3e-30 136.0 378 29.9
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 8.3e-30 135.6 371 27.5
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.4e-29 134.8 371 27.8
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 1.4e-29 134.8 371 29.9
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 1.8e-29 134.4 377 29.2
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 2.4e-29 134.0 373 28.2
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.5e-28 130.2 160 43.1
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 7.7e-28 129.0 378 28.6
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.0e-27 128.6 378 29.6
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.1e-26 125.2 152 45.4
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 2.5e-26 124.0 369 25.7
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 2.0e-23 114.4 73 69.9
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.6e-23 114.0 132 43.9
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.3e-22 111.7 74 67.6
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.2e-22 110.9 126 45.2
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.8e-21 107.8 441 25.9
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.4e-21 107.5 371 25.6
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 5.4e-21 106.3 242 28.1
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 6.6e-19 99.4 294 29.6
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 2.6e-15 87.4 82 51.2
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 5.7e-15 86.3 62 59.7
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 2.2e-14 84.3 68 57.4
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 1.8e-13 81.3 184 30.4
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.7e-11 74.7 208 29.8
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 9.5e-10 68.9 122 33.6
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 1.6e-09 68.2 56 53.6
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 1.4e-08 65.1 63 49.2
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 3.1e-08 63.9 35 77.1
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 5.8e-07 59.7 38 68.4


User provided reference genes

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