Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1572 Fragaria x ananassa HOM05D003448 ORTHO05D004028 6.1e-55 217.2 109 100.0
FAN17G1640 Fragaria x ananassa HOM05D003448 ORTHO05D004028 2.3e-54 215.3 109 99.1
FAN07G2405 Fragaria x ananassa HOM05D003448 ORTHO05D004028 1.5e-53 212.6 109 97.2
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 6.3e-52 207.2 109 97.2
FAN12G3596 Fragaria x ananassa HOM05D003448 ORTHO05D004028 9.7e-45 183.3 101 92.1
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 1.4e-35 152.9 115 71.3
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 8.8e-30 133.7 112 65.2
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 1.5e-29 132.9 116 61.2
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 1.8e-27 125.9 114 57.0
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 1.2e-26 123.2 110 61.8
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 1.5e-24 116.3 112 58.0
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 4.2e-24 114.8 117 53.0
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 1.2e-23 113.2 115 57.4
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 1.6e-23 112.8 111 57.7
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 2.1e-23 112.5 114 52.6
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 2.8e-23 112.1 106 57.5
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 2.8e-23 112.1 106 57.5
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 2.8e-23 112.1 107 55.1
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 4.7e-23 111.3 115 53.0
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 6.1e-23 110.9 115 57.4
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.4e-22 109.8 114 54.4
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 1.8e-22 109.4 109 57.8
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 3.0e-22 108.6 106 59.4
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 3.0e-22 108.6 112 54.5
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 6.8e-22 107.5 111 54.1
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 6.8e-22 107.5 113 54.0
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 8.9e-22 107.1 111 55.9
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 8.9e-22 107.1 109 51.4
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 1.2e-21 106.7 112 56.2
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 1.5e-21 106.3 112 55.4
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 1.5e-21 106.3 115 54.8
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 1.5e-21 106.3 114 56.1
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.0e-21 105.9 109 50.5
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.0e-21 105.9 109 50.5
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 2.6e-21 105.5 115 50.4
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 3.4e-21 105.1 114 55.3
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 4.4e-21 104.8 110 51.8
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.4e-21 104.8 109 54.1
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 4.4e-21 104.8 113 55.8
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 5.7e-21 104.4 114 51.8
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 7.5e-21 104.0 111 52.3
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 7.5e-21 104.0 111 52.3
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 7.5e-21 104.0 116 50.0
COL.COLO4_27958 Corchorus olitorius HOM05D003448 ORTHO05D004028 9.8e-21 103.6 99 55.6
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 9.8e-21 103.6 118 50.8
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 2.2e-20 102.4 114 51.8
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 2.2e-20 102.4 108 51.9
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 2.8e-20 102.1 115 51.3
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 2.8e-20 102.1 109 48.6
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 4.9e-20 101.3 107 54.2
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 6.3e-20 100.9 111 52.3
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 8.3e-20 100.5 113 54.0
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 1.1e-19 100.1 110 50.9
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 1.1e-19 100.1 115 48.7
Gohir.A03G102650 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.4e-19 99.8 99 53.5
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.8e-19 99.4 111 53.2
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 2.4e-19 99.0 110 48.2
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 4.1e-19 98.2 112 51.8
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 4.1e-19 98.2 111 55.9
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 5.4e-19 97.8 111 55.0
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 5.4e-19 97.8 114 50.0
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 5.4e-19 97.8 114 50.0
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 7.0e-19 97.4 114 50.0
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 7.0e-19 97.4 114 50.0
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 7.0e-19 97.4 112 54.5
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 9.2e-19 97.1 108 50.9
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 1.2e-18 96.7 116 45.7
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 2.7e-18 95.5 111 48.6
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 3.5e-18 95.1 111 52.3
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.5e-18 94.7 110 54.5
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 4.5e-18 94.7 109 50.5
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 4.5e-18 94.7 109 50.5
SalBow1G1885 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.8e-18 94.0 110 53.6
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.8e-18 94.0 110 53.6
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.0e-17 93.6 107 54.2
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.7e-17 92.8 112 50.9
TAR629G0321 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.7e-17 92.8 108 51.9
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 2.9e-17 92.0 115 47.8
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 2.9e-17 92.0 111 45.0
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 3.8e-17 91.7 107 47.7
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 3.8e-17 91.7 107 48.6
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 3.8e-17 91.7 107 50.5
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 6.6e-17 90.9 112 47.3
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 1.1e-16 90.1 111 47.7
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 1.1e-16 90.1 111 47.7
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.5e-16 89.7 109 51.4
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 7.3e-16 87.4 111 50.5
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 9.5e-16 87.0 110 46.4
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 2.1e-15 85.9 105 49.5
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.8e-15 85.5 116 44.8
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 6.1e-15 84.3 115 47.8
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 8.0e-15 84.0 96 47.9
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 6.8e-14 80.9 110 44.5
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 6.8e-14 80.9 104 48.1
SalBow8G2290 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.5e-13 79.7 99 51.5
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 2.0e-13 79.3 104 40.4
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 2.6e-13 79.0 104 41.3
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 4.4e-13 78.2 107 43.9
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.3e-12 76.6 112 42.9
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.2e-12 75.9 112 42.9
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 2.2e-12 75.9 97 47.4
Hma1.2p1_0261F.1_g104800 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.2e-12 75.9 60 65.0
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 2.9e-12 75.5 102 49.0
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 6.4e-12 74.3 104 43.3
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 8.3e-12 73.9 109 42.2
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 1.4e-11 73.2 113 43.4
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.4e-11 73.2 112 40.2
Os12g0257500 Oryza sativa ssp. japonica HOM05D003448 ORTHO05D004028 1.4e-11 73.2 113 43.4
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.6e-10 69.7 117 43.6
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 3.5e-10 68.6 100 43.0
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 3.5e-10 68.6 41 75.6
Zm00001eb408540 Zea mays HOM05D003448 ORTHO05D004028 3.5e-10 68.6 103 42.7
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 7.8e-10 67.4 108 42.6
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 1.3e-09 66.6 100 39.0
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.9e-09 65.1 110 38.2
ECA233G3599 Erigeron canadensis HOM05D003448 ORTHO05D004028 1.9e-08 62.8 60 51.7
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.3e-08 62.0 110 38.2
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 5.6e-08 61.2 98 36.7
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 9.5e-08 60.5 116 37.1
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 4.7e-07 58.2 108 36.1
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 6.2e-07 57.8 111 39.6
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 1.4e-06 56.6 114 36.0
Nitab4.5_0005448g0040 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.3e-06 55.8 39 71.8
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 3.1e-06 55.5 111 35.1
Cc00_g19080 Coffea canephora HOM05D004170 ORTHO05D005976 4.0e-06 55.1 35 74.3
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 5.2e-06 54.7 107 33.6
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 8.9e-06 53.9 98 38.8


User provided reference genes

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