Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 0.0e+00 2099.7 1148 100.0
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 0.0e+00 2099.7 1148 100.0
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 0.0e+00 1824.7 1163 89.5
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 0.0e+00 1822.0 1162 89.3
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 0.0e+00 1815.4 1162 89.2
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 0.0e+00 1815.4 1163 88.4
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 0.0e+00 1424.1 1185 72.7
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 3.2e-186 656.8 1224 44.1
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 2.9e-155 553.9 1240 40.1
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 2.4e-154 550.8 1249 39.7
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 8.1e-57 226.9 1279 26.5
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 2.5e-42 178.7 1226 27.5
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 5.6e-42 177.6 1422 25.0
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.0e-39 169.1 1208 27.3
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.4e-37 162.9 1347 25.7
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.4e-37 162.2 1331 25.2
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 6.0e-36 157.5 773 26.5
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 6.0e-36 157.5 1212 26.0
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 6.2e-33 147.5 1218 27.1
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.2e-29 135.2 1263 24.8
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 1.2e-28 133.3 1179 26.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.3e-26 124.8 404 32.4
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 9.6e-26 123.6 421 31.1
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.3e-25 123.2 787 25.7
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.1e-25 122.5 1279 24.8
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 3.7e-25 121.7 1199 24.9
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.0e-23 115.9 1440 23.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.6e-23 115.5 391 32.7
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 3.4e-23 115.2 1314 23.3
Cfa009271 Carpinus fangiana HOM05D005863 ORTHO05D003355 1.1e-21 110.2 802 26.3
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.0e-19 103.6 1219 25.3
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.5e-18 99.0 379 31.1
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.1e-16 91.7 1031 22.3
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 6.5e-14 84.3 93 52.7
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.1e-13 83.6 128 43.8
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 2.5e-13 82.4 103 47.6
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 3.2e-13 82.0 247 29.1
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 7.2e-13 80.9 82 54.9
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 1.6e-12 79.7 104 44.2
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 2.1e-12 79.3 94 43.6
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 7.9e-12 77.4 82 53.7
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.3e-11 76.6 102 44.1
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.8e-11 76.3 1235 23.6
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.3e-11 75.9 86 51.2
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 3.0e-11 75.5 118 39.8
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 3.9e-11 75.1 110 40.9
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 6.7e-11 74.3 1205 23.6
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.1e-10 73.6 196 29.6
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.1e-10 73.6 133 35.3
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.9e-10 72.8 100 45.0
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 2.5e-10 72.4 1199 23.5
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.5e-10 72.4 90 41.1
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.5e-10 72.4 255 27.8
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 2.5e-10 72.4 1293 22.5
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 3.3e-10 72.0 86 44.2
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 7.4e-10 70.9 135 37.8
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 9.7e-10 70.5 89 44.9
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 9.7e-10 70.5 88 43.2
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 9.7e-10 70.5 83 48.2
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.6e-09 69.7 98 41.8
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.6e-09 69.7 98 41.8
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.6e-09 69.7 82 47.6
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.6e-09 69.7 83 45.8
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.2e-09 69.3 91 38.5
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.2e-09 69.3 85 49.4
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.3e-09 67.8 89 46.1
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 6.3e-09 67.8 82 43.9
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 8.2e-09 67.4 85 45.9
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 8.2e-09 67.4 83 44.6
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.1e-08 67.0 89 46.1
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.8e-08 66.2 86 41.9
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 2.4e-08 65.9 118 36.4
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 2.4e-08 65.9 91 41.8
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 3.1e-08 65.5 94 42.6
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.1e-08 63.9 102 40.2
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 9.1e-08 63.9 80 47.5
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.2e-07 63.5 95 43.2
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 1.2e-07 63.5 91 40.7
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 1.2e-07 63.5 1147 22.3
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 2.0e-07 62.8 110 35.5
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.6e-07 62.4 257 29.2
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 3.4e-07 62.0 81 44.4
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.9e-07 61.2 93 40.9
Hma1.2p1_0815F.1_g222840 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 5.9e-07 61.2 353 29.2
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.0e-06 60.5 105 39.0
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 1.0e-06 60.5 97 38.1
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.0e-06 60.5 84 39.3
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 1.3e-06 60.1 80 40.0
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.3e-06 60.1 87 41.4
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.7e-06 59.7 313 25.9
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 1.7e-06 59.7 101 41.6
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.2e-06 59.3 120 31.7
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.9e-06 58.9 168 28.0
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 2.9e-06 58.9 117 32.5
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 8.5e-06 57.4 117 32.5
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.5e-06 57.4 87 41.4
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 8.5e-06 57.4 84 40.5


User provided reference genes

Program Settings