Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.1e-56 223.0 112 100.0
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.4e-37 158.3 79 100.0
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 1.3e-36 156.4 79 98.7
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.8e-36 154.8 80 97.5
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.4e-35 152.9 79 97.5
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 1.8e-17 92.8 81 64.2
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 5.2e-17 91.3 81 61.7
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 1.2e-16 90.1 83 61.4
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 4.4e-16 88.2 81 59.3
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 4.4e-16 88.2 82 61.0
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 1.4e-14 83.2 57 70.2
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 5.3e-14 81.3 55 70.9
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 7.0e-14 80.9 56 69.6
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 2.7e-13 79.0 55 67.3
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 2.9e-12 75.5 82 53.7
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 2.9e-12 75.5 55 67.3
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 8.5e-12 73.9 83 56.6
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 1.5e-11 73.2 73 53.4
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 1.5e-11 73.2 71 56.3
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 1.9e-11 72.8 81 48.1
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 2.5e-11 72.4 85 50.6
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 2.5e-11 72.4 57 63.2
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 4.2e-11 71.6 57 63.2
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 5.5e-11 71.2 75 56.0
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 7.2e-11 70.9 75 54.7
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 7.2e-11 70.9 82 50.0
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 9.4e-11 70.5 75 54.7
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.2e-10 70.1 53 62.3
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 1.6e-10 69.7 75 54.7
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 1.6e-10 69.7 86 48.8
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 1.6e-10 69.7 74 56.8
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 2.1e-10 69.3 71 53.5
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.1e-10 69.3 81 49.4
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 2.1e-10 69.3 71 52.1
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 2.1e-10 69.3 53 58.5
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 8.0e-10 67.4 61 55.7
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 8.0e-10 67.4 71 50.7
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.0e-09 67.0 81 49.4
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.0e-09 67.0 44 65.9
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.0e-09 67.0 85 49.4
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 1.0e-09 67.0 56 64.3
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 1.4e-09 66.6 59 64.4
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 1.8e-09 66.2 85 44.7
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 2.3e-09 65.9 61 57.4
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 2.3e-09 65.9 75 48.0
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 2.3e-09 65.9 45 68.9
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.0e-09 65.5 73 56.2
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 3.0e-09 65.5 58 58.6
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 3.0e-09 65.5 44 68.2
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 3.0e-09 65.5 44 68.2
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 3.0e-09 65.5 95 43.2
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 4.0e-09 65.1 77 51.9
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 4.0e-09 65.1 79 46.8
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 4.0e-09 65.1 58 65.5
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 4.0e-09 65.1 74 54.1
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 6.8e-09 64.3 71 50.7
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 8.8e-09 63.9 79 45.6
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 8.8e-09 63.9 80 47.5
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 1.2e-08 63.5 78 46.2
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 1.2e-08 63.5 70 51.4
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 1.5e-08 63.2 83 48.2
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.5e-08 63.2 58 60.3
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 2.0e-08 62.8 44 63.6
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 2.6e-08 62.4 82 45.1
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 2.6e-08 62.4 83 44.6
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 3.4e-08 62.0 77 46.8
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 3.4e-08 62.0 71 49.3
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 3.4e-08 62.0 71 49.3
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 3.4e-08 62.0 64 59.4
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 3.4e-08 62.0 58 55.2
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 3.4e-08 62.0 46 67.4
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 4.4e-08 61.6 67 46.3
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 4.4e-08 61.6 59 61.0
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 4.4e-08 61.6 75 46.7
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 4.4e-08 61.6 81 46.9
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 5.7e-08 61.2 77 48.1
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 5.7e-08 61.2 58 55.2
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 5.7e-08 61.2 67 46.3
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 5.7e-08 61.2 79 49.4
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 7.5e-08 60.8 71 45.1
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 7.5e-08 60.8 47 57.4
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 9.8e-08 60.5 75 44.0
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 9.8e-08 60.5 77 45.5
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 9.8e-08 60.5 71 47.9
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 9.8e-08 60.5 84 46.4
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 2.2e-07 59.3 77 42.9
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 2.2e-07 59.3 78 43.6
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 3.7e-07 58.5 73 45.2
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 3.7e-07 58.5 42 61.9
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 3.7e-07 58.5 42 61.9
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 3.7e-07 58.5 76 40.8
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 4.8e-07 58.2 66 51.5
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 6.3e-07 57.8 84 44.0
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 8.3e-07 57.4 74 44.6
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 8.3e-07 57.4 84 41.7
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.4e-06 56.6 41 63.4
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 1.8e-06 56.2 82 41.5
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 1.8e-06 56.2 88 47.7
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.4e-06 55.8 80 43.8
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.4e-06 55.8 46 52.2
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 3.1e-06 55.5 82 41.5
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 3.1e-06 55.5 82 41.5
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 3.1e-06 55.5 82 41.5
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 3.1e-06 55.5 56 44.6
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 3.1e-06 55.5 70 42.9
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 4.1e-06 55.1 81 40.7
DCAR_027337 Daucus carota HOM05D005475 ORTHO05D006575 5.4e-06 54.7 88 38.6
Ah.13g072270 Amaranthus hybridus HOM05D005475 ORTHO05D006575 9.1e-06 53.9 62 45.2


User provided reference genes

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