Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.0e-21 104.8 49 100.0
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.3e-17 91.3 42 97.6
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.3e-17 91.3 42 97.6
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.9e-16 88.2 42 92.9
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 1.4e-14 82.0 43 81.4
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.4e-14 82.0 43 81.4
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.4e-14 82.0 43 81.4
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.4e-14 82.0 43 81.4
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 4.0e-14 80.5 43 81.4
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 4.0e-14 80.5 43 81.4
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 8.9e-14 79.3 42 81.0
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 8.9e-14 79.3 43 79.1
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.2e-13 79.0 43 79.1
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-13 78.6 42 81.0
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 2.0e-13 78.2 43 79.1
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 2.6e-13 77.8 43 76.7
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 2.6e-13 77.8 43 76.7
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 2.6e-13 77.8 43 76.7
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 4.4e-13 77.0 42 76.2
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 5.8e-13 76.6 43 76.7
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 5.8e-13 76.6 43 76.7
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 7.5e-13 76.3 43 76.7
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 7.5e-13 76.3 43 76.7
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 7.5e-13 76.3 43 76.7
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 9.8e-13 75.9 42 78.6
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 9.8e-13 75.9 43 76.7
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 9.8e-13 75.9 43 76.7
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 9.8e-13 75.9 43 74.4
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 9.8e-13 75.9 42 78.6
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 1.3e-12 75.5 42 78.6
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 1.3e-12 75.5 43 74.4
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.3e-12 75.5 43 76.7
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.3e-12 75.5 42 76.2
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.7e-12 75.1 43 74.4
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 1.7e-12 75.1 42 78.6
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.7e-12 75.1 42 78.6
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 1.7e-12 75.1 43 74.4
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 1.7e-12 75.1 42 76.2
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.2e-12 74.7 43 74.4
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 2.2e-12 74.7 42 78.6
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 2.2e-12 74.7 43 76.7
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 2.2e-12 74.7 43 74.4
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 2.9e-12 74.3 43 74.4
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.9e-12 74.3 42 73.8
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 2.9e-12 74.3 43 76.7
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 2.9e-12 74.3 42 73.8
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 2.9e-12 74.3 42 73.8
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 2.9e-12 74.3 43 72.1
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 3.7e-12 73.9 42 76.2
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 3.7e-12 73.9 42 71.4
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 3.7e-12 73.9 42 76.2
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.7e-12 73.9 43 72.1
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 4.9e-12 73.6 43 72.1
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 4.9e-12 73.6 43 74.4
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 4.9e-12 73.6 43 74.4
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 6.4e-12 73.2 43 69.8
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 6.4e-12 73.2 43 72.1
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 6.4e-12 73.2 41 75.6
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 8.3e-12 72.8 42 73.8
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 8.3e-12 72.8 42 73.8
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 8.3e-12 72.8 42 73.8
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 8.3e-12 72.8 43 72.1
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 8.3e-12 72.8 43 67.4
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 8.3e-12 72.8 42 73.8
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 1.1e-11 72.4 42 73.8
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.1e-11 72.4 42 73.8
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.1e-11 72.4 42 73.8
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 1.1e-11 72.4 42 73.8
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.1e-11 72.4 41 78.0
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 1.4e-11 72.0 42 76.2
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-11 72.0 42 73.8
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-11 72.0 42 73.8
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 1.4e-11 72.0 42 73.8
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.4e-11 72.0 43 74.4
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.4e-11 72.0 43 74.4
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 1.4e-11 72.0 42 76.2
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 2.4e-11 71.2 43 69.8
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 3.2e-11 70.9 43 72.1
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 3.2e-11 70.9 43 72.1
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.2e-11 70.9 43 67.4
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 3.2e-11 70.9 43 72.1
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 3.2e-11 70.9 42 73.8
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 3.2e-11 70.9 42 71.4
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 3.2e-11 70.9 43 69.8
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 3.2e-11 70.9 43 69.8
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.1e-11 70.5 43 69.8
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 4.1e-11 70.5 43 69.8
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 5.4e-11 70.1 43 67.4
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 5.4e-11 70.1 42 71.4
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 5.4e-11 70.1 43 69.8
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 5.4e-11 70.1 42 71.4
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 5.4e-11 70.1 43 69.8
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 5.4e-11 70.1 43 67.4
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.4e-11 70.1 43 69.8
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.4e-11 70.1 43 69.8
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 5.4e-11 70.1 43 69.8
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 5.4e-11 70.1 43 69.8
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 7.0e-11 69.7 43 69.8
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 7.0e-11 69.7 43 67.4
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 7.0e-11 69.7 43 67.4
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 9.2e-11 69.3 43 69.8
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 9.2e-11 69.3 43 65.1
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.2e-10 68.9 42 71.4
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 1.2e-10 68.9 42 71.4
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 1.2e-10 68.9 42 69.0
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.2e-10 68.9 38 73.7
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.2e-10 68.9 43 69.8
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.6e-10 68.6 43 69.8
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 1.6e-10 68.6 43 62.8
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 1.6e-10 68.6 43 62.8
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 1.6e-10 68.6 42 64.3
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 1.6e-10 68.6 42 73.8
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 2.0e-10 68.2 43 69.8
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 2.0e-10 68.2 40 72.5
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 2.7e-10 67.8 43 67.4
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.7e-10 67.8 43 67.4
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.5e-10 67.4 42 69.0
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.6e-10 67.0 43 69.8
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 7.8e-10 66.2 43 67.4
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 7.8e-10 66.2 43 60.5
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.3e-09 65.5 43 60.5
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.7e-09 65.1 42 66.7
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.7e-09 65.1 43 62.8
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.7e-09 65.1 43 65.1
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.7e-09 65.1 41 63.4
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 3.0e-09 64.3 41 68.3
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 3.9e-09 63.9 43 58.1
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.0e-09 63.5 39 71.8
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.0e-09 63.5 39 71.8
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 5.0e-09 63.5 43 58.1
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 6.6e-09 63.2 38 63.2
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 6.6e-09 63.2 66 48.5
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 8.6e-09 62.8 42 64.3
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 1.1e-08 62.4 36 72.2
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.5e-08 62.0 44 63.6
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.5e-08 62.0 43 62.8
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 1.5e-08 62.0 41 58.5
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 1.9e-08 61.6 41 61.0
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 2.5e-08 61.2 43 67.4
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 2.5e-08 61.2 42 59.5
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 2.5e-08 61.2 42 59.5
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 4.3e-08 60.5 41 63.4
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 5.6e-08 60.1 43 55.8
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 7.3e-08 59.7 43 62.8
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 7.3e-08 59.7 43 62.8
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.2e-07 58.9 43 60.5
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 1.6e-07 58.5 36 66.7
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 2.1e-07 58.2 41 61.0
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 2.8e-07 57.8 43 58.1
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 3.6e-07 57.4 42 59.5
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 4.7e-07 57.0 43 55.8
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 4.7e-07 57.0 43 58.1
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 8.1e-07 56.2 41 61.0
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 8.1e-07 56.2 40 55.0
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.8e-06 55.1 42 57.1
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 1.8e-06 55.1 40 57.5
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 2.3e-06 54.7 41 63.4
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.3e-06 54.7 42 54.8
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.3e-06 54.7 41 58.5
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 3.1e-06 54.3 31 71.0
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.0e-06 53.9 41 58.5
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.0e-06 53.9 41 58.5
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 4.0e-06 53.9 41 58.5
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 5.2e-06 53.5 43 51.2
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 6.8e-06 53.1 28 85.7
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 6.8e-06 53.1 43 51.2


User provided reference genes

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