Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 5.4e-136 487.6 244 100.0
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.7e-134 482.6 244 99.2
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 3.3e-133 478.4 244 98.0
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.3e-131 472.2 244 96.3
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.2e-128 461.8 241 95.0
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 2.7e-111 405.6 261 82.4
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 2.2e-81 306.2 234 69.7
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 1.4e-80 303.5 247 66.4
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 1.2e-79 300.4 223 68.6
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 5.1e-78 295.0 231 66.7
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 2.5e-77 292.7 224 67.0
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 4.3e-77 292.0 215 68.8
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 1.3e-76 290.4 221 68.3
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 2.8e-76 289.3 255 60.0
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 3.7e-76 288.9 224 66.5
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 2.6e-74 282.7 257 60.7
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 3.4e-74 282.3 229 64.2
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 4.5e-74 282.0 206 70.4
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 7.7e-74 281.2 212 67.9
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 1.7e-73 280.0 237 61.2
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 2.9e-73 279.3 222 65.3
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 2.9e-73 279.3 233 63.9
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 3.8e-73 278.9 241 61.8
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 5.0e-73 278.5 197 71.1
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 5.0e-73 278.5 264 58.3
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 1.4e-72 276.9 240 61.2
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 1.4e-72 276.9 231 63.2
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 1.9e-72 276.6 226 64.6
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 2.5e-72 276.2 214 69.6
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 3.2e-72 275.8 226 64.6
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 4.2e-72 275.4 233 63.9
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 4.2e-72 275.4 233 63.9
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 4.2e-72 275.4 225 62.2
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 7.2e-72 274.6 211 66.4
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 7.2e-72 274.6 215 67.4
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 1.2e-71 273.9 242 62.4
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 1.6e-71 273.5 221 62.9
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 2.1e-71 273.1 209 67.0
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 3.6e-71 272.3 227 63.0
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 4.7e-71 271.9 241 58.5
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 6.1e-71 271.6 239 60.7
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 6.1e-71 271.6 215 64.7
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 6.1e-71 271.6 223 64.1
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 7.9e-71 271.2 210 63.8
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 1.4e-70 270.4 254 57.1
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 1.8e-70 270.0 205 65.9
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 6.7e-70 268.1 251 58.2
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 4.4e-69 265.4 210 66.2
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 4.4e-69 265.4 244 59.8
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 7.4e-69 264.6 224 62.1
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 9.7e-69 264.2 222 62.2
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 9.7e-69 264.2 209 65.1
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 1.3e-68 263.8 210 62.9
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 1.7e-68 263.5 240 57.5
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 2.2e-68 263.1 219 62.6
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 2.8e-68 262.7 253 57.3
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 2.8e-68 262.7 216 61.6
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 2.8e-68 262.7 244 57.4
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 3.7e-68 262.3 240 60.0
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 4.8e-68 261.9 201 64.7
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 8.2e-68 261.2 207 64.3
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 8.2e-68 261.2 200 67.0
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 8.2e-68 261.2 200 67.0
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 1.4e-67 260.4 218 61.5
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 3.1e-67 259.2 241 58.5
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 5.3e-67 258.5 247 57.1
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 7.0e-67 258.1 240 59.6
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 1.2e-66 257.3 219 61.2
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 1.5e-66 256.9 241 58.5
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 1.5e-66 256.9 227 61.7
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 2.0e-66 256.5 240 59.2
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 2.0e-66 256.5 273 53.8
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 2.0e-66 256.5 168 74.4
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 5.9e-66 255.0 212 62.7
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 5.9e-66 255.0 245 57.1
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 2.2e-65 253.1 290 52.1
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 2.2e-65 253.1 211 62.1
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 5.0e-65 251.9 223 59.2
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 6.5e-65 251.5 282 52.5
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 1.4e-64 250.4 245 55.9
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 2.5e-64 249.6 246 56.1
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 1.6e-63 246.9 214 59.3
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 3.6e-63 245.7 236 55.9
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.0e-62 244.2 169 71.0
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 1.1e-61 240.7 199 61.8
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 8.2e-60 234.6 171 66.7
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 3.5e-58 229.2 225 56.9
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.7e-57 226.9 289 47.4
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 1.1e-56 224.2 349 41.3
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 1.7e-52 210.3 197 52.8
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 2.2e-52 209.9 241 53.5
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 8.2e-52 208.0 202 54.0
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 3.5e-50 202.6 231 47.2
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 6.8e-46 188.3 189 50.8
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 8.8e-46 188.0 177 54.2
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 2.6e-45 186.4 218 51.4
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 1.7e-44 183.7 161 60.9
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 4.1e-43 179.1 197 52.8
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 1.2e-42 177.6 173 49.7
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 5.0e-33 145.6 145 60.0
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.9e-32 143.7 117 63.2
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 7.3e-32 141.7 91 74.7
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.2e-31 141.0 188 43.1
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 1.5e-29 134.0 160 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 5.8e-29 132.1 130 51.5
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 2.2e-28 130.2 141 51.8
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 4.9e-28 129.0 218 43.1
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 3.1e-22 109.8 141 48.2
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 1.7e-20 104.0 140 40.7
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 8.3e-20 101.7 190 38.4
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 1.9e-19 100.5 113 53.1
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 5.4e-11 72.4 102 40.2
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 5.4e-11 72.4 68 52.9
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.3e-09 67.8 84 48.8
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 3.0e-09 66.6 95 45.3
Psat5g184640 Pisum sativum HOM05D002956 ORTHO05D009000 1.1e-06 58.2 93 36.6
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 1.8e-06 57.4 61 47.5


User provided reference genes

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