Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 2.8e-34 147.9 68 100.0
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.8e-34 147.9 68 100.0
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.8e-34 147.9 68 100.0
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.8e-34 147.9 68 100.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 6.3e-34 146.7 68 98.5
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 1.0e-28 129.4 66 87.9
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 7.0e-25 116.7 57 91.2
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 1.6e-24 115.5 64 84.4
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.6e-24 115.5 59 89.8
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 2.6e-24 114.8 57 89.5
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 2.6e-24 114.8 57 89.5
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 2.6e-24 114.8 59 86.4
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 4.5e-24 114.0 64 84.4
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 4.5e-24 114.0 60 88.3
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 5.9e-24 113.6 57 89.5
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 5.9e-24 113.6 64 85.9
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 5.9e-24 113.6 58 89.7
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 5.9e-24 113.6 58 89.7
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 5.9e-24 113.6 59 86.4
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 1.0e-23 112.8 58 89.7
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 1.7e-23 112.1 63 82.5
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 2.2e-23 111.7 63 81.0
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 2.2e-23 111.7 58 84.5
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 2.9e-23 111.3 60 85.0
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.9e-23 111.3 57 86.0
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 2.9e-23 111.3 64 79.7
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.8e-23 110.9 54 90.7
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 5.0e-23 110.5 57 86.0
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 5.0e-23 110.5 58 87.9
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 6.5e-23 110.2 58 82.8
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 6.5e-23 110.2 59 83.1
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 8.5e-23 109.8 59 83.1
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 8.5e-23 109.8 59 84.7
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.1e-22 109.4 58 84.5
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.1e-22 109.4 59 83.1
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.5e-22 109.0 59 83.1
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.5e-22 109.0 59 84.7
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.9e-22 108.6 60 83.3
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 1.9e-22 108.6 57 87.7
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 1.9e-22 108.6 57 87.7
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 2.5e-22 108.2 57 84.2
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 2.5e-22 108.2 60 81.7
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 2.5e-22 108.2 58 86.2
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.2e-22 107.8 53 92.5
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.2e-22 107.8 53 92.5
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.2e-22 107.8 58 86.2
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.2e-22 107.8 58 86.2
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 3.2e-22 107.8 63 81.0
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 4.2e-22 107.5 59 83.1
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 4.2e-22 107.5 59 83.1
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 4.2e-22 107.5 55 87.3
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 4.2e-22 107.5 55 87.3
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 4.2e-22 107.5 59 83.1
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 5.5e-22 107.1 54 85.2
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 7.2e-22 106.7 67 79.1
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 7.2e-22 106.7 59 79.7
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 9.4e-22 106.3 59 83.1
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 1.2e-21 105.9 57 84.2
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 3.6e-21 104.4 60 80.0
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 3.6e-21 104.4 58 86.2
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 3.6e-21 104.4 53 86.8
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 3.6e-21 104.4 58 81.0
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 4.7e-21 104.0 62 79.0
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 4.7e-21 104.0 64 81.2
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 6.1e-21 103.6 58 81.0
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 6.1e-21 103.6 58 81.0
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 1.0e-20 102.8 62 77.4
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.4e-20 102.4 53 90.6
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.8e-20 102.1 61 78.7
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 2.3e-20 101.7 58 77.6
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 2.3e-20 101.7 63 74.6
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.0e-20 101.3 59 78.0
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 3.0e-20 101.3 65 75.4
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.0e-20 100.9 64 78.1
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.0e-20 100.9 64 78.1
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 4.0e-20 100.9 64 78.1
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 6.8e-20 100.1 53 84.9
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 8.8e-20 99.8 59 74.6
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 1.2e-19 99.4 55 81.8
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.0e-19 98.6 60 75.0
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 2.6e-19 98.2 59 74.6
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.4e-19 97.8 52 86.5
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 7.5e-19 96.7 63 71.4
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 7.5e-19 96.7 51 88.2
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 9.7e-19 96.3 52 84.6
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.7e-19 96.3 54 81.5
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.7e-19 96.3 54 81.5
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 9.7e-19 96.3 54 81.5
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 9.7e-19 96.3 52 80.8
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 1.3e-18 95.9 68 69.1
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.3e-18 95.9 58 75.9
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 2.2e-18 95.1 62 72.6
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 2.8e-18 94.7 52 82.7
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 3.7e-18 94.4 49 81.6
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.7e-18 94.4 53 79.2
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 4.8e-18 94.0 53 77.4
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 6.3e-18 93.6 52 80.8
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 8.3e-18 93.2 54 77.8
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.1e-17 92.8 63 66.7
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.4e-17 92.4 60 68.3
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.8e-17 92.0 60 71.7
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 3.1e-17 91.3 62 71.0
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.3e-17 90.5 59 69.5
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 5.3e-17 90.5 63 65.1
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 7.0e-17 90.1 65 66.2
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 7.0e-17 90.1 59 69.5
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 7.0e-17 90.1 51 78.4
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.2e-16 89.4 57 70.2
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.6e-16 89.0 59 72.9
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 4.5e-16 87.4 58 74.1
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 2.9e-15 84.7 54 72.2
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 3.8e-15 84.3 60 66.7
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 5.0e-15 84.0 44 86.4
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 5.0e-15 84.0 50 78.0
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 1.5e-14 82.4 56 67.9
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 2.5e-14 81.6 52 65.4
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 9.4e-14 79.7 53 67.9
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 2.1e-13 78.6 54 66.7
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 4.7e-13 77.4 64 62.5
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 1.4e-12 75.9 54 70.4
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 3.0e-12 74.7 53 62.3
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 8.8e-12 73.2 56 58.9
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 1.7e-10 68.9 53 60.4
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 1.1e-09 66.2 35 82.9
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 4.1e-09 64.3 40 72.5
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 4.1e-09 64.3 53 58.5
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 3.5e-08 61.2 64 50.0
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 5.9e-08 60.5 48 60.4
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 7.7e-08 60.1 77 39.0
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 8.6e-07 56.6 66 39.4
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 8.6e-07 56.6 66 39.4
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 1.1e-06 56.2 61 37.7
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.5e-06 55.8 66 37.9
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 1.9e-06 55.5 59 39.0
FAN07G1618 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.5e-06 55.1 37 67.6
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 2.5e-06 55.1 60 41.7
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 3.3e-06 54.7 48 45.8


User provided reference genes

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